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Job DescriptionP76616
Confidence100.00%DateThu Jan 5 12:25:01 GMT 2012
Rank61Aligned Residues317
% Identity17%Templated1gcya2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   213......220...... ...230.........240.........250.........260.........270.........280...
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Query Sequence  KKPGEAILHAFNAT. . . . . . . . . YQQIRENMSEFARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNP
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Template Sequence  HGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSS. . . . . . WSKSGGGEGYFWHDF. NKNGR
Template Known Secondary structure  GGG





TTSTTTTT
S


S




......B


B

SSTT
SSS.
S
SS
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   13......20.........30.........40.........50.........60..... ....70.........80 .....
 
   284.....290.........300.........310.........320.........330.........340.........350.........360...
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Query Sequence  MGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIEGGIPGYWQGQVLIPFIKDPVTKER
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Template Sequence  YGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDC. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S

TT


SB

TT
SS
S



SSSS
BGGGS............................
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   8990.........100.........110.........120.........130.........140
 
   364.....370.........380.........390.........400.........410.........420...... ...430.........440..
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Query Sequence  KQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQYVREMR. KYGVRGLRYDAAKHSK
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . ADPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYA
Template Known Secondary structure  .....................


SSS
BTTBSS

STTSTTBB
TTSS
S
GGGS
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   141........150.........160.........170.........180.........190.........
 
   443......450.........460.........470.........480.........490....... ..500.........510..
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Query Sequence  HEQIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYMEYLVTCQLDEQQMSSLL. . . . . . . . . . YERDDLSAIDFSLLM
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Template Sequence  PERVNSWMTD. . . . . . . . . . . . . . . . . . . SADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKDWSDRAKCPVFDFALKE
Template Known Secondary structure  ...................
TTS




GGGS
TTSGGGGS
TS

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   200......... 210.........220.........230.........240.........250.........260
 
   513......520.........530.........540.........550.........560... ......570.........580.........590
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Query Sequence  KTIKAFSFGGDLQTLASKPGSTISSIPSERRILININHDFPNNGNLFNDFL. . FNHQQDEQLAMAYIAALPFSRPLVYWD
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Template Sequence  RMQNGSI. . . . . ADWKHGLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSP. GTPVVYWD
Template Known Secondary structure  S
G.....GGGGGSGGG
SSTT
S

TTTSB
SSGGGB

SS


GGGSS.S
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   261...... ..270.........280.........290.........300.........310.........320...... ...330....
 
   591........600.........610.........620.........630..
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Query Sequence  GQVLKSTTEIKNYDGSTRVGGEAWLNKGCSTYQQLYNEFHAL
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Template Sequence  HMYDWG. . . . . . . . . . . . . . . . . . . . . . YGDFIRQLIQVRRA
Template Known Secondary structure  TSS......................
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   335....340 .........350....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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