 |
Job Description | P76616 | Confidence | 57.66% | Date | Thu Jan 5 12:25:01 GMT 2012 |
Rank | 445 | Aligned Residues | 60 |
% Identity | 10% | Template | c3lrmB_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:alpha-galactosidase 1; |
PDBTitle: structure of alfa-galactosidase from saccharomyces cerevisiae with2 raffinose
|
Resolution | 2.70 Å |
|
 |
  |   |
226 | . | . | . | 230 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | |
. | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|  |  |  |  |  |
| . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | Y | Q | Q | I | R | E | N | M | S | E | F | . |
. |
. |
. |
. |
A | R | C | H | Y | G | Y | I | Q | I | P | P | V | T | T | F | R | A | D | G | P | E | T | P | E | E | E | K | G | Y | W | F | H | A | Y | Q | P | E | D | L | C | T | I | H | . |
N | P | M | G | D | L | Q | D | F | I | A | L | V | K | D | A | K | K |
Query Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |
| . | . | . | . | . |   |   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |
|
|   |   |
|
| . |
|   |
|
|
|   |
|
|
|
|   |
|
|   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|   |   |   |
|
|   |
|   |   |   |
|
|   |   |   |
|
|   |
|
|   |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |
|
|   |   |
|   |   |   |   |
|   |   |
|
|
|   | . | . |
|
|
|   |
|
|
|   |
|
|   |
Template Sequence |   |
S | E | Q | L | L | L | D | T | A | D | R | I | S | D | L | G | L | K | D | M | G | Y | K | Y | I | I | L | D | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
C | W | S | S | G | R | D | S | D | G | F | L | V | A | D | E | Q | K | F | P | N | . |
. |
G | M | G | H | V | A | D | H | L | H | N |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| G | G | G | T |
|
|  |  |  |
|
| S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S |
|  |  |  |  |
| T | T | S |
|  |  |  |
| T | T | T |
| T | T | . | . |
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |
|
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
45 | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | |
|
. | . | . | . | . | 100 | . | . | . | . | . |
  |
  |   |
300 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
F | G | I | D | I |
Query Conservation |   |
  |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |
Template Sequence |   |
N | S | F | L | F |
Template Known Secondary structure |   |
T | T |
|  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
  |   |
106 | . | . | . | 110 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|