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Job DescriptionP76616
Confidence100.00%DateThu Jan 5 12:25:01 GMT 2012
Rank7Aligned Residues468
% Identity16%Templatec3edeB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:cyclomaltodextrinase; PDBTitle: structural base for cyclodextrin hydrolysis
Resolution1.71 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   174.....180.........190.........200.........210.... .....220.........230.........240.........250.
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Query Sequence  PSGQQETFKILINLEHLRQTLERKSLTAVQKSQCEIITPKK. . PGEAILHAFNATYQQIRENMSEFARCHYGYIQIPPVT
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Template Sequence  QGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGD. . . . . . . . . IRGTIDHLDYIAGLGFTQLWPTPLV
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TT




S
GGGSS
TT
S



TTSTTS




.........TTT




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   101........110.........120.........130.........140...... ...150.........160.........170.
 
   252.......260.........270.........280.........290.........300.........310.........320.........330.
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Query Sequence  TFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIR
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Template Sequence  ENDAAAY. . . . . . . . . SYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKD. . . . . . . . .
Template Known Secondary structure 


SS
.........GGG

S
S
TTT

TT


SB

TT
GGGGS.........
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   172...... .180.........190.........200.........210.........220.........230...
 
   332.......340.........350.........360.........370.........380.........390.........400.........410.
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Query Sequence  AKISKDIEGGIPGYWQGQVLIPFIKDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKRLNGMPKTTPKS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . LPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSENFTKGWFVEGMPDLNQTN
Template Known Secondary structure  ............................
SSTTSBGGGGS

B



GGGGS
TT

SBSSTTS
BB
TTS
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   234.....240.........250.........260.........270.........280.....
 
   412.......420....... ..430.........440.........450.........460.........470.........480.........490
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Query Sequence  DQVIMLQNQYVREMRK. YGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYMEYLVTCQLDE
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Template Sequence  PLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAEYP. . . . . . . . . . . . . . . . RLNMVGEEWSTRVPVV
Template Known Secondary structure  T
SSSGGGS

T................T




S
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   286...290.........300.........310.........320.........330... ......340.........
 
   491.... ....500.........510.........520.. .......530.........540.........550.........560..
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Query Sequence  QQMSS. . . . . LLYERDDLSAIDFSLLMKTIKAFSFGG. . . DLQTLASKPGSTISSIPSERRILININHDFPNNGNLFNDF
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Template Sequence  ARWQRGKANFDGYTSHLPSLMDFPLVDAMRNALSKTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAG. .
Template Known Secondary structure  TTSTT


TT






B

TTSS
TTGGGGSS
GGGSS

TTS

TT..
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   350.........360.........370.........380.........390.........400.........410.........420.......
 
   563......570.........580.........590..... ....600.........610....... ..620......
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Query Sequence  LFNHQQDEQLAMAYIAALPFSRPLVYWDGQVLK. . . . . STTEIKNYDGSTRVGGEAWLNK. . . . . . . . . . . GCSTYQQLY
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Template Sequence  . . EDFDRWRMNLVFLMTMP. RIPQFYSGDEILMTSTVKGRDDASYRRDFPGGWAGDKANAFSGAGLTSQQRAAQDLVRKL
Template Known Secondary structure  ..T
SS.STTGGGT




SS

GGGG



TTSSTT
SS
TTT
TT

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   428.430.........440.... .....450.........460.........470.........480.........490.........500....
 
   627..630.........640.........650.........660.........670.........680....... ..690.........700..
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Query Sequence  NEFHALYIDKAGIWSAFEGVSATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPN. . . . KLQPGIYKNMGSNSV
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Template Sequence  ANWRK. . NQPVIHNGRLMHFGPEENTWVYFR. . . . . . YNKDKRIMVAMNNNDKPMTLPTARFQEMLKGAPSGVDFLS. . .
Template Known Secondary structure  ..T




BTT......
SS
SSS
GGGGTT

BTTT...
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   505.... 510.........520.........530... ......540.........550.........560.........570...
 
   703......710.........720.........730.........740....
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Query Sequence  NIIINNTRKIIPPGKVFTLRGGTLNINIPGRSALLLGKTGEP
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Template Sequence  . . . . . . . . . . . . . GKTVGLGR. . . ELRLAPKSVVVIELPGLP
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SS...
TT



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   574.....580. ........590.........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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