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Job DescriptionP76616
Confidence98.71%DateThu Jan 5 12:25:01 GMT 2012
Rank115Aligned Residues371
% Identity12%Templatec3cc1B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:putative alpha-n-acetylgalactosaminidase; PDBTitle: crystal structure of a putative alpha-n-acetylgalactosaminidase2 (bh1870) from bacillus halodurans c-125 at 2.00 a resolution
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   226...230........ .240........ .250.........260.........270.........280.........290........
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Query Sequence  TYQQIRENMSEFA. . . . RCHYGYIQIP. . . PVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAK
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Template Sequence  TEEEVLGNAEYXANHLKKYGWEYIVVDIQWYEPTANNPFAPLCXDEYGRL. . LPATNRFPSAKNGAG. . . . FKPLSDAIH
Template Known Secondary structure 
TGGGT


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TT


TT



B
TTS
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TTT
GGGTTTTT....T
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   26...30.........40.........50.........60.........70..... ....80.........90 .........
 
   299300.........310 .........320.........330.........340.........350.........360.........
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Query Sequence  KFGIDIIPDYTF. . . . . . . . . NFMGIGGSGKNDLDYPSADIRAKISKDIEGGIPGYWQGQVLIPFIKDPVTKERKQIHPE
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Template Sequence  DLGLKFGIHIXRGIPRQAVYENSPVLGSTKTAREIAHTNSICPWNTDXYG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
SST
B
TTSS
BTT

BTTB
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   104.....110.........120.........130.........140.........150...
 
   370.........380.........390.........400.........410.........420.........430.........440.........
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Query Sequence  DIHLTAKDFEASKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VDPTKEGAQSYYNSLFELYAQWGVDFVKVDDIAASRLYDTHLE
Template Known Secondary structure  .....................................
TTSTTTT

S
S
BTTB


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   154.....160.........170.........180.........190......
 
   450.........460.........470.........480.........490.........500.........510.........520.........
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Query Sequence  ITPPLKNYNERLHNTNLFNPKYHKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLAS
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Template Sequence  EIKXIQRAIQACGRPXVLSLSPGPAPIKWRI. . . . . . . . . . . . . . . . . . . . . . . TDDFWDDWSLLYQXFE. . . . . RCEVW
Template Known Secondary structure  TSSS





S




TT.......................S
S

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   197..200.........210.........220....... ..230.........240... .....
 
   530.........540.........550.........560.........570.........580.........590.........600.........
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Query Sequence  KPGSTISSIPSERRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYIAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRV
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Template Sequence  EKHIGTGHWPDCGXLPLGHIGIRSVDGPGGDRWTRFTKDEQLTXXNLWAIC. . HSPLXFGG. . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TSS

SS





B

S
SS
SSSSSSS

S
..T


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   260.........270.........280.........290.........300.........310 ........
 
   610.........620.........630.........640.........650.........660.........670.........680.........
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Query Sequence  GGEAWLNKGCSTYQQLYNEFHALYIDKAGIWSAFEGVSATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKL
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Template Sequence  . . . . . . ELRDNDEWTLSLLTNEGILSINQKSVLNRFVYREEDKVAWAA. . . . . NGRNGEAYVALFNLHDQQKTLQFRLDX
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GGG




TT.....
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SSS

GGG
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   319320.........330.........340.........350.........360 .........370.........380.......
 
   690.........700.........710.........720.........730.........740...
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Query Sequence  . . . . QPGIYKNMGSNSVNIIINNTRKIIPPGKVFTLRGGTLNINIPGRSALLLGKTGE
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Template Sequence  VGIXETVQLFNVWDRS. . . . . . . . . . . . . . FLQSLAPSESFQIELKPHQSXXLKLSPD
Template Known Secondary structure  TT

S
TTT

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TT


TT

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   388.390.........400... ......410.........420.........430.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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