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Job DescriptionP76616
Confidence100.00%DateThu Jan 5 12:25:01 GMT 2012
Rank51Aligned Residues482
% Identity13%Templatec3amlA_
PDB info PDB header:transferaseChain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   142.......150.........160.........170 .........180.........190.........200.........210...
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Query Sequence  DKPSPKDKYVAYAINIPDYELAADVYNIN. . . . . . . . VTSPSGQQETFKILINLEHLRQTLERKSLTAVQKSQCEIITPK
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Template Sequence  DRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEV. . . . . . . . . . . . . . . . .
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TT
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   135....140.........150.........160.........170.........180.........190.......
 
   214.....220.........230... ......240.........250.........260.........270.........280.........290..
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Query Sequence  KPGEAILHAFNATYQQIREN. MSEFARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIA
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Template Sequence  . . . . . . . . . . . STYREFADNVLPRIRANNYNTVQLMAIMEHSYY. . . . . . . . . . . ASFGYHVTNFFAVSSRSGTPEDLKY
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TTT

S

S
G...........GGTT
S
S
GGG

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   198.200.........210.........220.........230 .........240.........250.....
 
   293......300.........310.........320.........330.........340.........350.........360.........370..
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Query Sequence  LVKDAKKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIEGGIPGYWQGQVLIPFIKDPVTKERKQIHPEDIH
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Template Sequence  LVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLW. . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT


S
B


TTTSGGGG
SS

GGGSSB

GGGGTTT..........................
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   256...260.........270.........280.........290.........300.........
 
   373......380.........390.........400.........410.........420...... ...430.........440.
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Query Sequence  LTAKDFEASKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQYVREMR. KYGVRGLRYDAAKHS. . . . . . . . . .
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKG
Template Known Secondary structure  ..............................T
B
TTS


TTBTTTTTT

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   310.........320.........330.........340.........350.........
 
   442.......450.........460.........470.........480.........490.........500.....
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Query Sequence  . . . . . . . . . . . . . . . . KHEQIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSA
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Template Sequence  FTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGG. . . . . . . . . . . . . . . . . . VGFDFR
Template Known Secondary structure 

S
GGGTSSTTB

TT


SS

TTTTS
GGGTS..................


S
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   360.........370.........380.........390.........400.........410..... ....420.
 
   506...510.........520 .........530.........540.........550........ .560....
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Query Sequence  IDFSLLMKTIKAFSF. GGDLQTLASKPGSTISSIPSERRILININHDFPNNGNL. . . . . . . . . . . . . . . . . . . . FNDFLF
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Template Sequence  LAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTIN
Template Known Secondary structure 
TT

GGG


S
TTS

S



TTS


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TTS
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   422.......430.........440.........450.........460.........470.........480.........490.........500.
 
   565....570.........580.........590.........600.........610...... ...620.........630...
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Query Sequence  NHQQDEQLAMAYIAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEAWLN. . . . . . . . . . . KGCSTYQQLYNEFHALY
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Template Sequence  RGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEF
Template Known Secondary structure 
STTGGGT

SB




GGGTT

TTSS


TTBS
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   502.......510.........520.........530.........540.........550.........560.........570.........580.
 
   634.....640.........650.........660.........670.........680.........690 ........ .
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Query Sequence  IDKAGIWSAFEGVSATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKLQ. PGIYKNMG. . . . . . . . . . . . . S
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Template Sequence  SFLSSSKQIVSDMNEKDKVIVFERGDL. . . . . . . . . . VFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVG
Template Known Secondary structure 
GGG


TTTTTT..........

SS

SS
STTSGGGTS


S
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   582.......590.........600........ .610.........620.........630.........640.........650.
 
   700.........710.........720.........730.........740......
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Query Sequence  NSVNIIINNTRKIIPPGKVFTLRGGTLNINIPGRSALLLGKTGEPPN
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Template Sequence  HDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDRE
Template Known Secondary structure  TT



S
TT
GGGSBTTBS
TT

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   652.......660.........670.........680.........690........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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