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Job DescriptionP76616
Confidence95.69%DateThu Jan 5 12:25:01 GMT 2012
Rank173Aligned Residues338
% Identity13%Templatec3a23A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative secreted alpha-galactosidase; PDBTitle: crystal structure of beta-l-arabinopyranosidase complexed with d-2 galactose
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   227..230...... ...240.........250.........260.........270.... .....280.........290........
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Query Sequence  YQQIRENMSE. . FARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQP. . . . . . EDLCTIHNPMGDLQDFIALVKDAK
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Template Sequence  IKKQVDAFVAAGLPAAGYTYINIDE. . . . . . . . . . . . . . . . . . . . . GWWQGTRDSAGNITVDTAEWPG. . GMSAITAYIH
Template Known Secondary structure  TTT



T.....................TS

S
B
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   75....80.........90......... 100.........110.........120. ........130.
 
   299300.........310.........320.........330.........340.........350.........360.........370........
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Query Sequence  KFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIEGGIPGYWQGQVLIPFIKDPVTKERKQIHPEDIHLTAKDF
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Template Sequence  SKGLKAGI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
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   132.......
 
   379380.........390.........400.........410.........420.........430......... 440.........450....
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Query Sequence  EASKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAK. . . . HSKHEQIERSITPPL
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Template Sequence  . . . . . . . . . . . YTDAGKDGCGYYYPTGRPAAPGSGSEGHYDQDMLQFSTWGFDFVKVDWCGGDAEGLDAATTYKSISDAV
Template Known Secondary structure  ...........SSSS
S
SSS


TT
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TT
T
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T

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   140.........150.........160.........170.........180.........190.........200........
 
   455....460.........470.........480.........490.........500.........510.........520.........530....
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Query Sequence  KNYNERLHNTNLFNPKYHKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGST
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Template Sequence  GRAAATTGRPLTLSICNWGYQNPWNWAAGQAPLWRTSTDIIYY. . . . . . . . . . . . . . . . . . . . GNQPSMTSLLSNFDQTL
Template Known Secondary structure  S




TTTT
GGGT
TTT
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   209210.........220.........230.........240.........250. ........260........
 
   535....540.........550.........560.........570.........580.........590.........600.........610....
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Query Sequence  ISSIPSERRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYIAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEAW
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Template Sequence  HPTAQHTGYYNDPDMLMVGM. . . . . . DGFTAAQNRTHMNLWAIS. . . . GAPLLAG. . . . . . . . . . . . . . . . . . . . NDLTT
Template Known Secondary structure 
TTT
BTTB

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TT
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GGG
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   269270.........280........ .290.........300...... ...310... .....
 
   615....620... ......630.........640.........650.........660.........670.........680....... ..
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Query Sequence  LNKGCSTYQ. . QLYNEFHALYIDKAGIWSAFEGVSATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPN. . . KL
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Template Sequence  MTSETAGILKNPEVIAVDQ. . . . DSRGLQGVKVAEDTTGLQAYGK. . . . VLSGTGNRAVVLLNRTSAAHDITVRWSDLGL
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   319320.........330....... ..340.........350......... 360.........370.........380.........390
 
   690.. .......700.........710.........720.........730.........740....
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Query Sequence  QPG. . IYKNMGSNSVNIIINNTRKIIPPGKVFTLRGGTLNINIPGRSALLLGKTGEP
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Template Sequence  TNASATVRDLWA. . . . . . . . . . . . . . . . RQNVGTSATGYTASVPAGGSVMLTVTGGT
Template Known Secondary structure 
SS
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   391........400.. .......410.........420.........430.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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