 |
Job Description | P76616 | Confidence | 65.24% | Date | Thu Jan 5 12:25:01 GMT 2012 |
Rank | 387 | Aligned Residues | 61 |
% Identity | 11% | Template | c2zdsB_ |
PDB info |
PDB header:dna binding protein | Chain: B: PDB Molecule:putative dna-binding protein; |
PDBTitle: crystal structure of sco6571 from streptomyces coelicolor2 a3(2)
|
Resolution | 2.30 Å |
|
 |
  |   |
220 | . | . | . | . | . | . | . | . | . | |
|
230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | H | A | F | N | A | T | Y | Q | Q | . |
. |
I | R | E | N | M | S | E | F | A | R | C | H | Y | G | Y | I | Q | I | P | P | V | T | T | F | R | A | D | G | P | E | T | P | E | E | E | K | G | Y | W | F | H | A | Y | Q | P | E | D | L | C | T | I | H | N | P | M | G | D | L | Q | D | F | I | A | L | V | K | D | A |
Query Conservation |   |
|
|
|   |   |   |   |   |   |   | . | . |
|   |   |   |   |   |   |
|   |   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |
|
|   |   |
|
|
|   |
|
|
|   |
|
|
|
|   |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |
|   |   |   |
|   |   |
|   |   |
|
|
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
F | T | L | F | T | G | Q | W | A | D | L | P | L | E | E | V | C | R | L | A | R | D | F | G | Y | D | G | L | E | L | A | C | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
W | G | D | H | F | E | V | D | K | A | L | A | D | P | S | Y | V | D | S | R | H | Q | L | L |
Template Known Secondary structure |   |
 |  |  |  |
| G | G | G | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  | S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S | T | T | T |
|
|  |  |  |  |  |  |
| T | T |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . |
  |
  |   |
298 | . | 300 | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
K | K | F | G | I | D | I |
Query Conservation |   |
|
|   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |
|
Template Sequence |   |
D | K | Y | G | L | K | C |
Template Known Secondary structure |   |
 |  | T | T |
| B |
|
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
60 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|