Job Description P76616 Confidence 96.98% Date Thu Jan 5 12:25:01 GMT 2012 Rank 143 Aligned Residues 170 % Identity 16% Template c1kwgA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of thermus thermophilus a4 beta-galactosidase Resolution 1.60 Å

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		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		N	A	T	Y	Q	Q	I	R	E	N	M	S	E	F	A	R	C	H	Y	G	Y	I	Q	I	P	P	V	T	T	F	R	A	D	G	P	E	T	P	E	E	E	K	G	Y	W	.	F	H	A	Y	Q	P	E	D	L	C	T	I	H	N	P	M	G	D	L	Q	D	F	I	A	L	V	K	D	A	K	K	F	G	I
Query Conservation																																															.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.								.	.	.	.	.					.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.					.
Template Sequence		H	W	P	K	E	R	W	K	E	D	A	R	R	M	R	E	A	G	L	S	H	V	R	I	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	W	A	L	L	E	P	E	.	.	.	.	.	P	G	R	L	.	E	W	G	W	L	D	E	A	I	A	T	L	A	A	E	G	L
Template Known Secondary structure		G	S																T								T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							S	B	.	.	.	.	.	T	T	B		.														T	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.					.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																			.	.	.	.	40	.	.	.	.						.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	I	P	D	Y	T	F	N	F	M	G	I	G	G	S	G	K	N	D	L	D	Y	P	S	A	D	I	R	A	K	I	S	K	D	I	E	G	G	I	P	G	Y	W	Q	G	Q	V	L	I	P	F	I	K	D	P	V	T	K	E	R	K	Q	I	H	P	E	D	I	H	L	T	A	K	D	F	E	A	S	K
Query Conservation
Alig confidence								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	V	L	G	T	.	P	T	A	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	W	L	V	D	R	Y	P	E	I	L	P	V	D
Template Known Secondary structure								.	S	T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									G	G	G	S		B
Template Predicted Secondary structure								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.		.	.	.	.	.																																																						.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.					430	.	.	.	.	.	.								.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure																																														.				.	.	.	.								.	.	.	.	.	.	.
Query SS confidence																																														.				.	.	.	.								.	.	.	.	.	.	.
Query Sequence		D	N	I	S	K	D	E	W	E	N	L	H	A	L	K	E	K	R	L	N	G	M	P	K	T	T	P	K	S	D	Q	V	I	M	L	Q	N	Q	Y	V	R	E	M	R	.	K	Y	G	.	.	.	.	V	R	G	L	R	Y	D	.	.	.	.	.	.	.	A	A	K	H	S	K	H	E	Q	I	E	R	S	I
Query Conservation																																														.				.	.	.	.								.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.																										.				.	.	.	.								.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	E	G	R	R	R	R	F	.	.	.	.	.	.	.	.	.	.	.	G	G	R	R	H	Y	C	F	S	S	P	V	Y	R	E	E	A	R	R	I	V	T	L	L	A	E	R	Y	G	G	L	E	A	V	A	G	F	Q	T	D	N	E	Y	G	C	H	D	T	V	R	C	Y	C	P	R	C	Q	E	A	F	R
Template Known Secondary structure		T	T	S		B			S	.	.	.	.	.	.	.	.	.	.	.	S	S	S					T	T																				T	T		T	T							S	S	S	T	T	T	T	T	T	S				S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.												100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	P	L	K	N	Y	N	E	R	L	H	N	T	N	L	F	N	P	K	Y	H	K	K	A	V	M	N	Y	M	E	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	W	L	E	A	R	Y	G	T	I	E	A	L	N	E	A	W	G	T	A	F	W	S	Q	R	Y	R	S	F	A	E	V
Template Known Secondary structure									S	S									T	T	T	G	G	G				S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions