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Job DescriptionP76616
Confidence97.05%DateThu Jan 5 12:25:01 GMT 2012
Rank141Aligned Residues333
% Identity15%Templatec1ktbA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: the structure of alpha-n-acetylgalactosaminidase
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   227..230...... ...240.........250.........260.........270.. .......280.........290.........300.
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Query Sequence  YQQIRENMSE. . FARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAY. . . QPEDLCTIHNPMGDLQDFIALVKDAKKFG
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Template Sequence  FMEMADRIAEDGWRELGYKYINIDD. . . . . . . . . . . . . . . . . . CWAAKQRDAEGRLVPDPERF. . PRGIKALADYVHARG
Template Known Secondary structure  SST



S..................S
B
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TTS


B
TTT
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   38.40.........50.........60.. .......70.........80.. .......90.......
 
   302.......310.........320.........330.........340.........350.........360.........370.........380.
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Query Sequence  IDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIEGGIPGYWQGQVLIPFIKDPVTKERKQIHPEDIHLTAKDFEAS
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Template Sequence  LKLGIYGDLGRLT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
BSSB
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   98.100.........110
 
   382.......390.........400.........410.........420.........430.........440.........450.........460.
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Query Sequence  KDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . CGGYPGTTLDRVEQDAQTFAEWGVDMLKLDGC. YSSGKEQAQGYPQMARALNATG
Template Known Secondary structure  .........................TTSSB
B
GGGT


T.T

TT
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   111........120.........130.........140.. .......150.........160....
 
   462.......470.........480.........490.........500.........510.........520.... .....530.......
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Query Sequence  HNTNLFNPKYHKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDL. . . . QTLASKPGSTISS
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Template Conservation                   .........................               
 
 
    
             
Template Sequence  RPIVYSCSWPAYQGGLP. . . . . . . . . . . . . . . . . . . . . . . . . PKVNYTLLGEICNLWRNYDDIQDSWDSVLSIVDWFFTN
Template Known Secondary structure  S


TTSST.........................TT


S
S



SST
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   165....170.........180. ........190.........200.........210.........
 
   538.540.........550.........560.........570.........580.........590.........600.........610.......
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Query Sequence  IPSERRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYIAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEAWLNK
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Template Conservation                
 
         
  
     
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Template Sequence  QDVLQPFAGPGHWNDPDMLIIGNFGLSYEQSRSQMALWTIM. . . . AAPLLMS. . . . . . . . . . . . . . . . . . . . TDLRTISP
Template Known Secondary structure  GGGTGGG
BTTB


B
TTSSS

T....T


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TTT

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   220.........230.........240.........250.........260 ....... ..270.....
 
   618.620.........630.........640.........650.........660.........670...... ...680....... ..690..
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Query Sequence  GCSTYQQLYNEFHALYIDKAGIWSAFEGVSATKNVLAFSRGDSVNINHSPHDGLVIINK. GNEEVEGTWPN. . . KLQPG.
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Template Sequence  SAKKILQNRLMIQI. . NQDPLGIQGRRIIKEGSHIEVFLR. . . . . PLSQAASALVFFSRRTDMPFRYTTSLAKLGFPMGA
Template Known Secondary structure  T
..T
TT




TTS.....
STT


SSS
T

TT
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   276...280......... 290.........300.........310... ......320.........330.........340........
 
   693......700.........710.........720. ........730.........740....
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Query Sequence  . . IYKNMGSNSVNIIINNTRKIIPPGKVFTL. . RGGTLNINIPGRSALLLGKTGEP
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Template Conservation     
 
 
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Template Sequence  AYEVQDVYS. . . . . . . . . . . . . . . . GKIISGLKTGDNFTVIINPSGVVMWYLCPKA
Template Known Secondary structure  TTT................

TTS
TT


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   349350....... ..360.........370.........380........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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