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Job DescriptionP76616
Confidence100.00%DateThu Jan 5 12:25:01 GMT 2012
Rank20Aligned Residues458
% Identity13%Templatec1hvxA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:alpha-amylase; PDBTitle: bacillus stearothermophilus alpha-amylase
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   216...220...... ...230.........240.........250.........260.........270....... ..
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Query Sequence  GEAILHAFNAT. . . . . . . YQQIRENMSEFARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDL. . . . . . . . . CT
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Template Sequence  NGTMMQYFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSR. . . . . . . . . . . SDVGYGVYDLYDLGEFNQKGA
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TT

SSS
TT




SSST...........T

SSSTT
SS
S
BTTB
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   5....10.........20.........30.........40.........50.. .......60.........70...
 
   280.........290.........300.........310.... .....320.........330.........340.........350.......
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Query Sequence  IHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMG. . IGGSGKNDLDYPSADIRAKISKDIEGGIPGYWQGQVLIPFIKD
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Template Sequence  VRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSS
Template Known Secondary structure  SS
SS

TT


S


STT
S

B

TTTTTSS

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   74.....80.........90.........100.........110.........120.........130.........140.........150...
 
   358.360.........370..... ....380.........390.........400.........410.........420...... ...430.....
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Query Sequence  PVTKERKQIHPEDIHLTA. KDFEASKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQYVREMR. KYGVRGLRY
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Template Sequence  FKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRL
Template Known Secondary structure 

B
GGGTTTT
STT



SS


TTS




SS
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   154.....160.........170.........180.........190.........200.........210.........220.........230...
 
   436...440.........450.........460.........470.........480.........490.........500.........510.....
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Query Sequence  DAAKHSKHEQIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTI
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Template Sequence  DAVKHIKFSFFPDWLSYVRSQTG. . . . . . . . . . . . . . . KPLFTVGEYWSYDINKLHNYIMKT. . NGTMSLFDAPLHNKFY
Template Known Secondary structure  TTGGGS
TT
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S
T..TT
S
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   234.....240.........250...... ...260.........270.........280 .........290......
 
   516...520.........530.........540.........550.........560.........570.........580.........590.....
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Query Sequence  KAFSFGGDLQTLASKPGSTISSIPSERRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYIAALPFSRPLVYWDGQVLK
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Template Sequence  TASK. SGGTFDMRTLMTNTLMKDQPTLAVTFVDNHDTEPGQALQS. . . WVDPWFKPLAYAFILTRQEGYPCVFYGDYYGI
Template Known Secondary structure  .TTT
S
GGGTTTT

GGGS

TTTSTTSTT

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TTTSSSS
B
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   297..300 .........310.........320.........330.........340 .........350.........360.........370..
 
   596...600.........610.........620.........630.........640.........650.........660.........670.....
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Query Sequence  STTEIKNYDGSTRVGGEAWLNKGCSTYQQLYNEFHALYIDKAGIWSAFEGVSATKNVLAFSRGDSVNINHSPHDGLVIIN
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Template Sequence  PQYN. . . . . . . . . . . . . . . . IPSLKSKIDPLLIARR. . . . . DYAYGTQHDYLDHSDIIGWTREGVTE. KPGSGLAALITD
Template Known Secondary structure  GGGT................B


.....T

S


SSS

BTT.BTT

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   373... ...380.........390.. .......400.........410........ .420.........430
 
   676...680.........690.........700.........710.........720.........730.........740
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Query Sequence  KGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKVFTLRGGTLNINIPGRSALLLGK
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Template Sequence  GPGGSKWMYVGKQHAGKVFYDLTGNR. . . . . . . . . . . . . SDTVTINSDGWGEFKVNGGSVSVWVP
Template Known Secondary structure  SS


GGGTT
TTSS
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TT
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   431........440.........450...... ...460.........470.........480..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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