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Job DescriptionP76616
Confidence76.62%DateThu Jan 5 12:25:01 GMT 2012
Rank288Aligned Residues144
% Identity15%Templatec1hl8B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of thermotoga maritima alpha-fucosidase
Resolution2.4 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   234.....240.........250.........260.........270.........280.........290.........300.........310...
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Query Sequence  MSEFARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFM
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Template Sequence  ADLFKKAGAKYVIPTT. . K. . . . HHDGFCLWGTK. . . . . . YTDFNSVKRGP. KRDLVGDLAKAVREAGLRFGV. . . . . . .
Template Known Secondary structure  T
S......
TT

BSS

S......S
S
BTTTSTT.SS
TT

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   111........120...... . ..130........ .140......... 150.........160.........170
 
   314.....320.........330.........340.........350.........360.........370.........380.........390...
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Query Sequence  GIGGSGKNDLDYPSADIRAKISKDIEGGIPGYWQGQVLIPFIKDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWENL
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Template Sequence  . . . . . . . . . . . . . . . . . . . YYSGGLDWRFTTEPIRYPE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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S

TTS

S


SGG..........................................
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   171........180.........
 
   394.....400.........410.........420...... ...430.........440.........450.........460.......
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Query Sequence  HALKEKRLNGMPKTTPKSDQVIMLQNQYVREMR. KYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTNLF
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Template Sequence  . . . . . . . . . DLSYIRPNTYEYADYAYKQVMELVDLYLPDVLWNDMGWPEKGKEDLKYLFAYYYNKHPEGSVNDRW
Template Known Secondary structure  .........GGGT
S

S

S

S


GGGTT
TT

B
S
S
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   190.........200.........210.........220.........230.........240.........250.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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