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Job DescriptionP76616
Confidence100.00%DateThu Jan 5 12:25:01 GMT 2012
Rank31Aligned Residues386
% Identity18%Templatec1gcyA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase; PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   215....220...... ...230.........240.........250.........260.........270.........280.....
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Query Sequence  PGEAILHAFNAT. . . . . . . . . YQQIRENMSEFARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMG
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Template Sequence  GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSS. . . . . . WSKSGGGEGYFWHDF. NKNGRYG
Template Known Secondary structure  G





TTSTTTTT
S


S




......B


B

SSTT
SSS.
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SSS
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   15....20.........30.........40.........50.........60..... ....70.........80 .......
 
   286...290.........300.........310.........320.........330.........340.........350.........360.....
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Query Sequence  DLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIEGGIPGYWQGQVLIPFIKDPVTKERKQ
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Template Sequence  SDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDC. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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TT


SB

TT
SS
S



SSSS
BGGGS..............................
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   91........100.........110.........120.........130.........140
 
   366...370.........380.........390.........400.........410.........420...... ...430.........440....
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Query Sequence  IHPEDIHLTAKDFEASKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQYVREMR. KYGVRGLRYDAAKHSKHE
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Template Sequence  . . . . . . . . . . . . . . . . . . . ADPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPE
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SSS
BTTBSS

STTSTTBB
TTSS
S
GGGS
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   141........150.........160.........170.........180.........190.........200.
 
   445....450.........460.........470.........480.........490.........500.........510.........520....
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Query Sequence  QIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDL
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Template Sequence  RVNSWMTDS. . . . . . . . . ADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKDWSDRAKCPVFDFALKERMQN. . . . . GSI
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TTS




GGGS
TTSGGGGS
TS

.....S
G
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   202.......210 .........220.........230.........240.........250.........260.... ...
 
   525....530.........540.........550.........560.... .....570.........580.........590.........600..
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Query Sequence  QTLASKPGSTISSIPSERRILININHDFPNNGNLFNDFLF. . NHQQDEQLAMAYIAALPFSRPLVYWDGQVLKSTTEIKN
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Template Sequence  ADWKHGLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSP. GTPVVYWDHMYDWG. . . . . .
Template Known Secondary structure  GGGGGSGGG
SSTT
S

TTTSB
SSGGGB

SS


GGGSS.STSS......
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   268.270.........280.........290.........300.........310.........320...... ...330.........340
 
   603......610.........620.........630.........640.........650.........660.........670.........680..
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Query Sequence  YDGSTRVGGEAWLNKGCSTYQQLYNEFHALYIDKAGIWSAFEGVSATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVE
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Template Sequence  . . . . . . . . . . . . . . . . YGDFIRQLIQVRRAAG. . VRADSAISFHSGYSGLVATVSGSQ. . . . . . . . QTLVVALNSD. . . .
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TT

TTSSS
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   341........350...... ...360.........370.........380 .........390
 
   683......690.........700.........710.........720........
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Query Sequence  GTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKVFTLRGGTLNI
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Template Sequence  LGNPGQVASGSFSE. . . . . . . . . . . . . . . . . . . . . AVNASNGQVRV
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GGGT

S

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   391........400.... .....410.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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