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Job DescriptionP76616
Confidence100.00%DateThu Jan 5 12:25:01 GMT 2012
Rank36Aligned Residues496
% Identity16%Templatec1bf2A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:isoamylase; PDBTitle: structure of pseudomonas isoamylase
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   158.160.........170.........180.........190.........200.........210.........220.........230.......
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Query Sequence  PDYELAADVYNINVTSPSGQQETFKILINLEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEF
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Template Sequence  KGVVLVPSTQSTGTKPTRAQKDDVIYEVHVRGFTEQDTSIPAQ. . . . . . . . . . . . . . . . . . . . . . YRGTYYGAGLKASYL
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GGG


TT
TTS
GG......................GTTST
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   157..160.........170.........180.........190......... 200.........210....
 
   238.240.........250.........260.. .......270.........280...... ...290.........300.........
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Query Sequence  ARCHYGYIQIPPVTTFRADGPETPE. EEKGYWFHAYQPEDLCTIHNPMGD. . . . . . . LQDFIALVKDAKKFGIDIIPDYT
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Template Sequence  ASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVV
Template Known Secondary structure  T

S

B
BS
TTTTSSTT

TT


S


BS
SS
B
GGG
S

STTTT

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   215....220.........230.........240.........250.........260.........270.........280.........290....
 
   310.........320.........330 .........340.........350.........360.........370.........380..
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Query Sequence  FNFMGIGGSGKNDLDYPSADI. . . . . . . RAKISKDIEGGIPGYWQGQVLIPFIKDPVTKERKQIHPEDIHLTAKDFEASK
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Template Sequence  YNHTAEGGTWTSSDPTTATIYSWRGLDNATYYE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
SS
TT
SBSSSS
SS
BB
SSB
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   295....300.........310.........320.......
 
   383......390.........400.........410.........420...... ...430.........440.........450.........460.
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Query Sequence  DNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQYVREMR. KYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERL
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Template Sequence  . . . . . . . LTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGG
Template Known Secondary structure  .......B
TTSSSB

SSSSS

B
TTSTS


TTGGGGGB

SSSS

TTSTT
TT
S
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   328.330.........340.........350.........360.........370.........380.........390.........400
 
   462....... 470.........480.........490.........500.........510.........520......
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Query Sequence  HNTNLFNP. . . . . . . . . . . . . . . KYHKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQT
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Template Sequence  YNFDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGNS. . . . YQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTI
Template Known Secondary structure 

B
TT
TTSS
B

TT

SSB



SSTT
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TT
S
TT


BTTB

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   401........410.........420.........430.........440... ......450.........460.........470......
 
   527..530... ......540.........550......... 560....
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Query Sequence  LASKPGS. . . . . . . . . TISSIPSERRILININHDFPNNGNLF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NDFLF
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Template Sequence  YVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSAGTGAAV
Template Known Secondary structure 
TT
GGGT

GGG
S

SSS

TT
SS





TTS






S





TTTTTTS

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   477..480.........490.........500.........510.........520.........530.........540.........550......
 
   565....570.........580.........590..... ....600.........610...... ...620.........630.........
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Query Sequence  NHQQDEQLAMAYIAALPFSRPLVYWDGQVLK. STTEIKNYDGSTRVGGEAWLN. . . . KGCSTYQQLYNEFHALYIDKAGI
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Template Sequence  DQRRAARTGMAFEMLSA. GTPLMQGGDEYLRTLQCNNNAYNLDSSANWLTYSWTTDQSNFYTFAQRLIAFRK. . AHPALR
Template Known Secondary structure  SS.STTGGGT


TT
S

TT

STTTS





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GGGS
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   557..560.........570... ......580.........590.........600.........610.........620....... ..630...
 
   640....... ..650.........660.........670.........680.........690.........700
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Query Sequence  WSAFEGVS. . . . . . . . . . . . . . . . . . . ATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSN
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Template Sequence  PSSWYSGSQLTWYQPSGAVADSNYWNNTSNYAIAYAINGP. . SLGDSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVTDT
Template Known Secondary structure 
SS


TTT
TTSSB

T
TT


GG..GGT
SS

SSS




SSSS

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   634.....640.........650.........660.........670... ......680.........690.........700.........710.
 
   701........710.........720.........730.........740
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Query Sequence  SVNIIINNTRKIIPPGKVFTLRGGTLNINIPGRSALLLGK
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Template Sequence  CDWNDGASTFVAPGSETLIGGAGT. . TYGQCGQSLLLLIS
Template Known Secondary structure  SGGG
STTSB

TT

STT
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SS
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   712.......720.........730..... ....740.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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