Job Description P75874 Confidence 89.66% Date Thu Jan 5 12:15:20 GMT 2012 Rank 303 Aligned Residues 125 % Identity 15% Template c8ldhA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:m4 apo-lactate dehydrogenase; PDBTitle: refined crystal structure of dogfish m4 apo-lactate2 dehydrogenase Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.						.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																												.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.																												.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	E	T	D	I	A	G	I	L	T	S	T	H	.	.	.	.	.	T	I	A	L	V	G	A	S	D	K	P	D	R	P	S	Y	R	V	M	K	Y	L	L	D	Q	G	Y	.	.	H	V	I	P	V	S	P	K	V	A	G	K	T	L	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.	.	.	.	.																												.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.								.	.	.	.																	.	.									.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.																											.	.
Template Sequence		L	K	D	K	L	I	G	H	L	A	T	S	Q	E	P	R	S	Y	N	K	I	T	V	V	G	V	.	.	.	.	G	A	V	G	M	A	C	A	I	S	I	L	M	K	D	L	A	D	E	V	A	L	V	D	V	M	.	.	E	D	K	L	K	G	E	M	M	D	L	Q	H	G	S	L	F	L	H	T	A	K
Template Known Secondary structure											S								S	S								.	.	.	.	S												T	T	T			S							S		.	.														T	G	G	G
Template Predicted Secondary structure																												.	.	.	.																											.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80																	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.			.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.			.	.
Query Sequence		Q	K	G	Y	G	T	L	A	D	V	P	E	K	V	D	M	V	D	V	F	R	N	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	A	W	G	V	A	Q	E	A	I	A	I	G	A	K	T	L	W	M	Q	L	G	V	I	N	E	Q	A	A	V	L	A	R	D	A	.	G	L	.	.
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.			.	.
Alig confidence												.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.			.	.
Template Conservation												.
Template Sequence		I	V	S	G	K	D	Y	S	V	S	.	A	G	S	K	L	V	V	I	T	A	G	A	R	Q	Q	E	G	E	S	R	L	N	L	V	Q	R	N	V	N	I	F	K	F	I	I	P	N	I	V	K	H	S	P	D	C	I	I	L	V	V	S	N	P	V	D	V	L	T	Y	V	A	W	K	L	S	G	L	P	M
Template Known Secondary structure						S	S	G	G	G	G	.	T	T		S												T	T																										T	T							S	S	S													T			G
Template Predicted Secondary structure												.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
			119	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	N	V	V	M	D	R	C	P	A	I	E	I	P	R	L
Query Conservation		.
Alig confidence		.						.
Template Conservation								.
Template Sequence		H	R	I	I	G	S	.	G	C	N	L	D	S	A	R	F
Template Known Secondary structure		G	G					.	T	T
Template Predicted Secondary structure								.
Template SS confidence
		156	.	.	.	160	.		.	.	.	.	.	.	.	.	170

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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