 |
Job Description | P75874 | Confidence | 94.54% | Date | Thu Jan 5 12:15:20 GMT 2012 |
Rank | 236 | Aligned Residues | 105 |
% Identity | 13% | Template | c2q49B_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:probable n-acetyl-gamma-glutamyl-phosphate reductase; |
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at2g19940
|
Resolution | 2.19 Å |
|
 |
  |   |
15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | |
. | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |
|
|
|
|
|
|
|  |  |
|
| . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | I | A | L | V | G | A | S | D | K | P | D | R | P | S | Y | R | V | M | K | Y | L | L | D | Q | G | Y | . |
H | V | I | P | V | S | P | K | V | A | G | K | T | L | L | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | K | G | Y | G | T | L | A | D | V | P | E | K | V | D | M | V | D | V | F | R | N | S | E | A |
Query Conservation |   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|   | . |   |
|   |   |
|   |
|   |   |   |   |   |   |
|   |
| . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |
|
|   |
|
|
|   |   |
|
|
|
|
|
|   |
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
| . | . | . |
|   |
|
|   |   |
|   |
|
|
|   |   |
|
|   |   |
|
|   |   |
|
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |
|   |   |   |
Template Sequence |   |
R | I | G | L | L | G | A | S | . |
. |
. |
G | Y | T | G | A | E | I | V | R | L | L | A | N | H | P | H | F | Q | V | T | L | M | T | A | D | R | K | A | G | Q | S | M | E | S | V | F | P | H | L | R | A | Q | K | L | P | T | L | V | S | V | K | D | A | D | F | S | T | V | D | A | V | F | C | C | L | P | H | G | T |
Template Known Secondary structure |   |
 |  |  |  |  |
| T | T | . | . | . | S |  |  |  |  |  |  |  |  |  |  |  | T |
| S | S |  |  |  |  |  |  |  |
| G | G | G | T | T | S |
| G | G | G | T |
| G | G | G | T | T | S |
|
|
|
|
| B |
| T | T | T | S |
| T | T | S |
| S |  |  |  |  |
|
|
| T | T | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
| . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
18 | . | 20 | . | . | . | . | . | |
|
|
. | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . |
  |
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | W | G | V | A | Q | E | A | I | A | I | G | A | K | T | L | W | M | Q | L | G | V | I | N | E | Q | A | A | V | L | A | R | D | A | G | L | N | V | V | M | D |
Query Conservation |   |
|   |   |   |
|   |
|   |   |   |   |
|
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   | . |   |   |
|   |   |
|
|
|
|
|   |   |
|
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
Template Sequence |   |
T | Q | E | I | I | K | E | L | . |
P | T | A | L | K | I | V | D | L | S | A | D | F | R | L | R | N | I | A | E | Y | E | E | W | Y | G | Q | P | H | K | A | V |
Template Known Secondary structure |   |
 |  |  |  |  |  | T | S | . |
| S | S |
|  |  |  |  |
| S | S | T | T | T |
| S |
|  |  |  |  |  |  |  |  | S | S |
|
| S |
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  | . |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
95 | . | . | . | . | 100 | . | . | |
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|