 |
Job Description | P75874 | Confidence | 97.63% | Date | Thu Jan 5 12:15:20 GMT 2012 |
Rank | 70 | Aligned Residues | 107 |
% Identity | 17% | Template | c2axqA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:saccharopine dehydrogenase; |
PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
|
Resolution | 1.70 Å |
|
 |
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | |
40 | . | . | . | . | . | . | . | . | . | 50 | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |
|
|  |  |  |
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | T | I | A | L | V | G | A | S | D | K | P | D | R | P | S | Y | R | V | M | K | Y | L | L | D | Q | . |
G | Y | H | V | I | P | V | S | P | K | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | G | K | T | L | L | G | Q | K | G | Y | G | T | L | A | D | V | P | E | K | V | D | M | V | D | V | F | R | N | S | E |
Query Conservation |   |
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   | . |
|   |   |
|   |   |
|   |
|   |   | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |
|   |   |   |   |   |
|
|   |
|
|
|   |   |
|
|
|
|
|
|   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|
|
| . | . | . | . |
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |   |   |
|   |   |
Template Sequence |   |
K | N | V | L | L | L | G | S | . |
. |
. |
. |
G | F | V | A | Q | P | V | I | D | T | L | A | A | N | D | D | I | N | V | T | V | A | C | R | T | L | A | N | A | Q | A | L | A | K | P | S | G | S | K | A | I | S | L | D | V | T | D | D | S | A | L | D | K | V | L | A | D | N | D | V | V | I | S | L | I | P | Y | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |
|
| . | . | . | . | S | T | T |  |  |  |  |  |  |  |  |  | T | S | T | T |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  | G | G | G | T |
|  |  |  |  |
|
| T | T |
|  |  |  |  |  |  |  |  |  | T | S | S |  |  |  |  |
| S |
| G | G |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
| . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | |
|
|
|
. | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | |
. | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  | . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | W | G | V | A | Q | E | A | I | A | I | G | A | K | T | L | W | M | Q | L | G | V | I | N | . |
E | Q | A | A | V | L | A | R | D | A | G | L | N | V | V | M | D | R | C |
Query Conservation |   |
  |
|   |   |   |
|   |
|   |   |   |   |
|
|   |   |
|   |   |   |   |
|   |   |   | . |   |   |   |   |   |   |
|   |   |   |
|
|   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |
|
|   |   |
| . |   |   |   |
Template Sequence |   |
F | H | P | N | V | V | K | S | A | I | R | T | K | T | D | V | V | T | S | S | Y | I | S | P | A | L | R | E | L | E | P | E | I | V | K | A | G | I | T | V | M | . |
N | E | I |
Template Known Secondary structure |   |
G |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |
| S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  | . |
| S |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | |
120 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|