 |
Job Description | P75874 | Confidence | 89.64% | Date | Thu Jan 5 12:15:20 GMT 2012 |
Rank | 304 | Aligned Residues | 105 |
% Identity | 10% | Template | c1bxgA_ |
PDB info |
PDB header:amino acid dehydrogenase | Chain: A: PDB Molecule:phenylalanine dehydrogenase; |
PDBTitle: phenylalanine dehydrogenase structure in ternary complex2 with nad+ and beta-phenylpropionate
|
Resolution | 2.30 Å |
|
 |
  |   |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | |
|
|
. | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
| . | . | . |
|
|  |  |
|
|  |  |  |
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | S | T | H | T | I | A | L | V | G | A | S | D | K | P | D | R | P | S | Y | R | V | M | K | Y | L | L | D | Q | G | Y | H | V | I | P | V | S | P | K | V | A | . |
. |
. |
G | K | T | L | L | G | Q | K | G | Y | G | T | L | A | D | V | P | E | K | V | D | M | V | D | V | F | R | N | S | E | A | A | W | G | V | A |
Query Conservation |   |
  |   |
|
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |
|   |   |   | . | . | . |   |   |   |
|   |
|   |   |   |   |   |
|
|   |
|
|
|   |   |
|
|
|
|
|
|   |
|
|   |   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|   |
|
|
|   | . | . | . | . |
|   |
|
|   |   |   |
|   |   |
|   |   |   |
|
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|
|   |
|   |   |   |   |
|   |   |   |   |
Template Sequence |   |
L | D | G | L | T | V | L | V | Q | G | L | . |
. |
. |
. |
G | A | V | G | G | S | L | A | S | L | A | A | E | A | G | A | Q | L | L | V | A | D | T | D | T | E | R | V | A | H | A | V | A | L | G | H | T | A | V | A | L | E | D | V | L | S | T | P | C | D | V | F | A | P | C | A | M | G | G | V | I | T | T | E | V |
Template Known Secondary structure |   |
S | T | T |
|  |  |  |  |  |
|
| . | . | . | . | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  | T | T |
|  |  |
|
| G | G | G | G | G | G |
|
|
| S |  |  |  |  |
| S |
| S |
|
| B |
|  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
| . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
173 | . | . | . | . | . | . | 180 | . | . | . | |
|
|
|
. | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . |
  |
  |   |
88 | . | 90 | . | . | . | . | . | . | . | . | . | 100 | |
|
. | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | E | A | I | A | I | G | A | K | T | L | W | M | . |
. |
Q | L | G | V | I | N | E | Q | A | A | V | L | A | R | D | A | G | L | N | V | V |
Query Conservation |   |
  |
|   |   |   |   |
|
|   |   |
|   |   | . | . |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|
|
Alig confidence |   |
|
| . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   | . | . |   |   |   |
|
|   |
|
|
|   |
|
|   |
|   |
|   |   |   |
|   |   |   |
|   |   |
|
|
|
|
|
|
Template Sequence |   |
A | R | . |
. |
T | L | D | C | S | V | V | A | G | A | A | N | N | V | I | A | D | E | A | A | S | D | I | L | H | A | R | G | I | L | Y | A |
Template Known Secondary structure |   |
 |  | . | . |  |
|
|
| S |  |  |
|
| S |
| S |
|
| B | S |
|  |  |  |  |  |  |  |  |  |  | T |
|  |  |
|
Template Predicted Secondary structure |   |
 |  | . | . |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
249 | 250 | |
|
. | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|