Job Description P77333 Confidence 100.00% Date Thu Jan 5 12:27:53 GMT 2012 Rank 6 Aligned Residues 277 % Identity 19% Template c3fzvC_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of pa01 protein, putative lysr family2 transcriptional regulator from pseudomonas aeruginosa Resolution 2.71 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	I	A	D	L	M	A	F	V	V	V	A	E	E	R	S	F	T	R	A	A	A	R	L	S	M	A	Q	S	A	L	S	Q	I	V	R	R	I	E	E	R	L	G	L	R	L	L	T	R	T	T	R	S	V	V	P	T	E	A	G	E	H	L	L	S	V	L	G	P	M	L	H	D	I	D	S	A	M	A
Query Conservation
Alig confidence																																																																												.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		Y	T	L	R	Q	L	K	Y	F	V	T	T	V	E	C	G	S	V	A	E	A	S	R	K	L	Y	I	A	Q	P	S	I	S	T	A	V	K	G	L	E	E	S	F	G	V	Q	L	F	S	L	T	P	A	G	A	R	F	Y	R	K	A	Q	E	L	L	R	X	A	H	E	F	E	Q	N	.	.	.	.	.	.
Template Known Secondary structure																	S	S								T	T																		T	S																										T				.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		S	L	S	D	L	Q	N	R	P	S	G	T	I	R	I	T	T	V	E	H	A	A	K	T	I	L	L	P	A	M	R	T	F	L	K	S	H	P	E	I	D	I	Q	L	T	I	D	Y	G	.	.	.	L	T	D	V	V	S	E	R	F	D	A	G	V	R	L	G	G	E	M	D	K	D	M	I	A	I	R	I
Query Conservation																																																			.	.	.
Alig confidence		.	.	.	.	.	.																																												.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	D	V	I	A	G	Q	I	D	I	G	C	F	E	T	V	A	P	L	Y	L	P	G	L	I	A	G	F	R	Q	A	Y	P	G	V	E	I	R	I	R	D	G	E	Q	Q	E	L	V	Q	G	L	T	S	G	R	F	D	L	A	F	L	Y	E	H	D	L	D	S	T	I	E	T	E	P	L
Template Known Secondary structure		.	.	.	.	.	.													T	T	T																	T	T																				T	S		S						S	S	S			T	T						S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	D	I	P	M	A	I	V	G	S	P	D	Y	F	S	R	R	S	V	P	T	S	V	S	Q	L	I	D	H	Q	A	I	N	L	Y	L	P	T	S	G	T	A	N	R	W	R	L	I	R	G	G	R	E	V	R	V	R	M	E	G	Q	L	L	L	N	T	I	D	L	I	I	D	A	A	I	D	G	H	G
Query Conservation
Alig confidence																																					.	.	.	.
Template Conservation																																					.	.	.	.
Template Sequence		X	P	P	Q	R	P	H	A	L	L	P	E	G	H	R	F	A	G	Q	A	Q	V	S	L	R	D	L	C	L	E	P	X	I	L	L	.	.	.	.	D	V	Q	P	S	R	T	Y	F	V	S	L	F	E	E	L	G	L	T	P	N	I	A	F	S	S	P	S	I	E	X	V	R	G	X	V	G	Q	G	F	G
Template Known Secondary structure		S			B								T	T		T	T	T	T	S	S								T	T	S						.	.	.	.			T	T												T	T										S											T	T	S
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		L	A	Y	L	P	Y	D	Q	V	E	R	A	I	K	E	K	.	K	L	I	R	V	L	D	K	F	T	P	D	L	P	G	Y	H	L	Y	Y	P	H	R	R	H	A	G	S	A	F	S	L	F	I	D	R	L	K	Y	K
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		F	S	L	L	V	T	R	P	H	S	E	C	T	Y	D	G	K	K	V	V	X	V	D	L	A	E	P	V	S	T	S	G	L	A	A	A	W	L	K	R	A	Q	L	T	K	P	A	R	L	F	V	D	Y	C	R	E	Q
Template Known Secondary structure		B								S			B		T	T	S		B							S	S				B									S	S	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions