Job Description A5A625 Confidence 1.71% Date Thu Jan 5 10:55:29 GMT 2012 Rank 92 Aligned Residues 26 % Identity 27% Template c1zc1A_ PDB info PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.														.	.	.	.	80	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	Y	K	I	D	A	G	L	S	E	S	Y	T	C	Y	L	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	K	I	I	R	P
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	V	N	M	P	Q	T	F	E	E	F	F	R	C	Y	P	I	A	M	M	N	D	R	I	R	K	D	D	A	N	F	G	G	K	I	F	L	P
Template Known Secondary structure		T																	G	G	G	S		T	T	T	S							S	S
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions