Job Description P25527 Confidence 100.00% Date Thu Jan 5 11:41:58 GMT 2012 Rank 1 Aligned Residues 430 % Identity 15% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		G	G	G	L	K	S	R	H	V	T	M	L	S	I	A	G	V	I	G	A	S	L	F	V	G	S	S	V	A	I	A	E	A	G	P	A	V	L	L	A	Y	L	F	A	G	L	L	V	V	M	I	M	R	M	L	A	E	M	A	V	A	T	P	D	T	G	S	F	S	T	Y	A	D	K	A	I	G	R	.	W
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	V	S	N	A	G	P	I	A	F	I	H	K	A	I	G	D	N	I
Template Known Secondary structure					B																		T	T	T	S									G	G	G																								T	T				T	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	Y	T	I	G	W	L	Y	W	W	F	W	V	L	V	I	P	L	E	A	N	I	A	A	M	I	L	H	S	W	V	P	G	I	P	I	W	L	F	S	L	V	I	T	L	A	L	T	G	S	N	L	L	S	V	K	N	Y	G	E	F	E	F	W	L	A	L	C	K	V	I	A	I	L	A	F	I	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L	L	I	L	G	L
Template Known Secondary structure																																	T	T																										T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	V	A	I	S	G	F	Y	P	Y	A	E	V	S	G	I	S	R	L	W	D	S	G	G	F	M	P	N	G	F	G	A	V	L	S	A	M	L	I	T	M	F	S	F	M	G	A	E	I	V	T	I	A	A	A	E	S	D	T	P	E	K	H	I	V	R	A	T	N	S	V	I	W	R	I	S	I	F	Y
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.
Template Sequence		F	I	F	A	G	L	.	.	.	.	.	.	.	.	I	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I	L	I	V	M	F	V	Y
Template Known Secondary structure								.	.	.	.	.	.	.	.					G	G	G	T	S				S														G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170									.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	S	I	F	V	V	V	A	L	I	P	W	N	M	P	G	L	K	A	V	G	S	Y	R	S	V	L	E	L	L	N	I	P	H	A	K	L	I	M	D	C	V	I	L	L	S	V	T	S	C	L	N	S	A	L	Y	T	A	S	R	M	L	Y	S	L	S	R	R	G	D	A	P	A	V	M	G	K	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S	L	A	K	D	G	E	L	P	E	F	F	E	R	K	V
Template Known Secondary structure										T	T	S								T	G	G	G																																			T	T	T											S	S			S	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	K	T	P	Y	V	A	V	L	L	S	T	G	A	A	F	L	T	V	V	V	N	Y	Y	A	P	A	K	V	F	K	F	L	I	D	S	S	G	A	I	A	L	L	V	Y	L	V	I	A	V	S	Q	L	R	M	R	K	I	L	R	A	E	G	S	E	I	R	L	R	M	W	L	Y	P	W	L	T	W	L
Query Conservation
Alig confidence																										.	.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.																																		.	.	.	.	.
Template Sequence		W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	M	.	.	.	.	.	.	.	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	K	.	.	.	.	.	E	I	V	I	F	S	F	I	V	V	L
Template Known Secondary structure				S		T																	S			.	.	.	.	.	.	.																									T									.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.																																		.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340								.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.						.	.	.	.	.	.	380	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	G	F	I	T	F	V	L	V	V	M	L	F	R	P	A	Q	Q	L	E	V	I	S	T	G	L	L	A	I	G	I	I	C	T	V	P	I	M	A	R	W	K	K	L	V	L	W	Q	K	T	P	V	H	N
Query Conservation
Alig confidence															.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		G	V	F	L	L	L	L	Y	Y	Q	W	I	T	.	.	.	.	N	R	F	V	F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I	I	Y	R	K	V	T	K	R	T	F	S	N	N	M	Y	V	K	S
Template Known Secondary structure															.	.	.	.																																G	G	G	T	T	T
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.					.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.