Job Description P25527 Confidence 2.09% Date Thu Jan 5 11:41:58 GMT 2012 Rank 31 Aligned Residues 192 % Identity 10% Template c3aqpB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus Resolution 3.30 Å

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		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	P	E	K	H	I	V	R	A	T	N	S	V	I	W	R	I	S	I	F	Y	L	C	S	I	F	V	V	V	A	L	I	P	W	N	M	P	G	L	K	A	V	G	S	Y	R	S	V	L	E	L	L	N	I	P	H	A	K	L	I	M	D	C	V	I	L	L	S	V	T	S	C	L	N	S	A	L	Y	T
Query Conservation
Alig confidence																																											.	.
Template Conservation																																											.	.
Template Sequence		Q	D	A	I	Q	A	G	I	R	S	A	L	I	G	T	L	A	I	F	L	L	I	F	A	Y	Y	G	P	H	L	G	L	V	A	S	L	G	L	L	Y	T	.	.	S	A	L	I	L	G	L	L	S	G	L	G	A	T	L	T	L	P	G	I	A	G	L	V	L	T	L	G	A	A	V	D	G	N	V	L	S
Template Known Secondary structure																												T															.	.
Template Predicted Secondary structure																																											.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		A	S	R	M	L	Y	S	L	S	R	R	G	D	A	P	A	V	M	G	K	I	N	R	S	.	K	T	P	Y	V	A	V	L	L	S	T	G	A	A	F	L	T	V	V	V	N	Y	Y	A	P	A	K	V	F	K	F	L	I	D	S	S	G	A	I	A	L	L	V	Y	L	V	I	A	V	S	Q	L	R	M	R
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		F	E	R	I	K	E	E	L	R	A	G	K	K	L	R	Q	A	I	P	E	G	F	R	H	S	T	L	T	I	M	D	V	N	I	A	H	L	L	A	A	A	A	L	Y	Q	Y	A	T	G	P	V	R	G	F	A	V	I	L	A	I	G	V	V	A	S	V	F	S	N	L	V	F	S	R	H	L	L	E	R	L
Template Known Secondary structure											T	T																																			T			T
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.									.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure												.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.
Query Sequence		K	I	L	R	A	E	G	S	E	I	.	.	.	.	.	.	.	.	R	L	R	M	W	L	Y	P	W	L	T	W	L	V	I	G	F	I	T	F	V	L	V	V	M
Query Conservation												.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	R	G	E	I	R	P	P	M	W	L	V	D	P	R	F	N	F	M	G	P	A	R	Y	V	T	A	A	T	L	L	L	A	A	L	A	A	G	V	V	F	A
Template Known Secondary structure					T														S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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