Job Description P0AF63 Confidence 92.25% Date Thu Jan 5 11:25:20 GMT 2012 Rank 199 Aligned Residues 78 % Identity 12% Template d1sd4a_ SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Penicillinase repressor Resolution 2.00

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Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.					.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.																									.
Query SS confidence																																					.	.	.	.																									.
Query Sequence		M	Q	L	T	S	F	T	D	Y	G	L	R	A	L	I	Y	M	A	S	L	P	E	G	R	M	T	S	I	S	E	V	T	D	V	Y	.	.	.	.	G	V	S	R	N	H	M	V	K	I	I	N	Q	L	S	R	A	G	Y	V	T	A	V	R	.	G	K	N	G	G	I	R	L	G	K	P	A	S	A	I	R
Query Conservation																																					.	.	.	.																									.
Alig confidence									.	.	.								.	.					.												.	.	.	.																									.
Template Conservation									.	.	.								.	.					.
Template Sequence		V	E	I	S	X	A	E	.	.	.	W	D	V	X	N	I	I	.	.	W	D	K	K	.	S	V	S	A	N	E	I	V	V	E	I	Q	K	Y	K	E	V	S	D	K	T	I	R	T	L	I	T	R	L	Y	K	K	E	I	I	K	R	Y	K	S	E	N	I	Y	F	Y	S	S	N	I	K	E	D	D	I	K
Template Known Secondary structure									.	.	.								.	.			S	S	.	S												T	T	S																	T	T	S							T	T								S
Template Predicted Secondary structure									.	.	.								.	.					.
Template SS confidence
		6	.	.	.	10	.	.				.	.	.	.	.	.	.			20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	D	V	V	R	E	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	K	T	A	K	T	F	L	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions