 |
Job Description | P0AF63 | Confidence | 48.81% | Date | Thu Jan 5 11:25:20 GMT 2012 |
Rank | 386 | Aligned Residues | 61 |
% Identity | 13% | Template | c3gx4X_ |
PDB info |
PDB header:dna binding protein/dna | Chain: X: PDB Molecule:alkyltransferase-like protein 1; |
PDBTitle: crystal structure analysis of s. pombe atl in complex with dna
|
Resolution | 2.70 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | 60 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | Q | L | T | S | F | T | D | Y | G | L | R | A | L | I | Y | M | A | S | L | P | E | G | R | M | T | S | I | S | E | V | T | D | V | Y | G | V | S | R | N | H | M | V | K | I | I | N | Q | L | S | R | A | G | Y | . |
. |
. |
. |
. |
. |
. |
. |
V | T | A | V | R | G | K | N | G | G | I |
Query Conservation |   |
|
|
|
|   |   |   |   |
|
|
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |
|   |   |   |   |
|   |
|
|
|   |   |
|   |   |
|
|
| . | . | . | . | . | . | . | . |
|   |
|   |
|
|   |   |
|
|
|
Alig confidence |   |
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   | . | . | . |
|   |   |   |
|   |   |   |
|   |   |
|
|   |
|   |
|   |
|
|
|   |
|
|   |   |   |
|   |
| . |   |   |
|
|   |
|
|   |
|
|   |   |
|
|   |   |   |   |
|
|
|
|
|
|
|   |
|   |
|   |
|   |   |   |
Template Sequence |   |
M | R | M | D | E | . |
. |
. |
F | Y | T | K | V | Y | D | A | V | C | E | I | P | Y | G | K | V | S | T | Y | G | E | I | A | R | Y | V | G | M | P | . |
S | Y | A | R | Q | V | G | Q | A | M | K | H | L | H | P | E | T | H | V | P | W | H | R | V | I | N | S | R | G | T | I | S | K | R |
Template Known Secondary structure |   |
|
|  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  | T | S |
| T | T |
| B |  |  |  |  |  |  |  |  |  | T | T |
| T | . | T |
|  |  |  |  |  |  |  |  |  | T |
|
| T | T |
|
| S |
| G | G | G |  |  |
| T | T | S | B |
|
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|  | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
|  |  |  |  |  |  |  |
|
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | |
|
|
. | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | |
. | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|