Job Description P0AF63 Confidence 44.88% Date Thu Jan 5 11:25:20 GMT 2012 Rank 397 Aligned Residues 61 % Identity 21% Template c2hwvA_ PDB info PDB header:transcription Chain: A: PDB Molecule:dna-binding response regulator vicr; PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily. Resolution 1.90 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.						.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.									.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																															.	.	.	.	.																	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.																	.	.	.	.	.	.	.	.
Query Sequence		T	D	Y	G	L	R	A	L	I	Y	M	A	S	L	P	E	G	R	M	T	S	I	S	E	V	T	D	V	Y	.	.	.	.	.	G	V	S	R	N	H	M	V	K	I	I	N	Q	L	S	R	.	.	.	.	.	.	.	.	A	G	Y	V	T	A	V	R	G	K	N	G	G	I	R	L	G	K	P
Query Conservation																															.	.	.	.	.																	.	.	.	.	.	.	.	.
Alig confidence																			.												.	.	.	.	.																	.	.	.	.	.	.	.	.											.	.
Template Conservation																			.																																																			.	.
Template Sequence		T	H	R	E	F	E	L	L	Y	Y	L	A	K	H	I	G	Q	.	V	M	T	R	E	H	L	L	Q	T	V	W	G	Y	D	Y	F	G	D	V	R	T	V	D	V	T	V	R	R	L	R	E	K	I	E	D	S	P	S	H	P	T	Y	L	V	T	R	R	G	V	.	.	G	Y	Y	L	R	N	P
Template Known Secondary structure															T	T	T		.		B										T		G	G	G	T	T																		S	S	T	T	S		S	S					T	T	T	.	.
Template Predicted Secondary structure																			.																																																			.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions