Job Description P37009 Confidence 100.00% Date Thu Jan 5 11:54:22 GMT 2012 Rank 4 Aligned Residues 335 % Identity 40% Template c1vciA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	Q	K	N	F	V	E	L	R	N	V	T	K	R	F	G	S	N	T	V	I	D	N	I	N	L	T	I	P	Q	G	Q	M	V	T	L	L	G	P	S	G	C	G	K	T	T	I	L	R	L	V	A	G	L	E	K	P	S	E	G	Q	I	F	I	D	G	E	D	V	T	H	R	S	I	Q	Q	R	D	I
Query Conservation
Alig confidence					.	.	.
Template Conservation					.	.	.
Template Sequence		M	V	E	.	.	.	V	K	L	E	N	L	T	K	R	F	G	N	F	T	A	V	N	K	L	N	L	T	I	K	D	G	E	F	L	V	L	L	G	P	S	G	C	G	K	T	T	T	L	R	M	I	A	G	L	E	E	P	T	E	G	R	I	Y	F	G	D	R	D	V	T	Y	L	P	P	K	D	R	N	I
Template Known Secondary structure					.	.	.											T	T													T	T									T	T	S	S										T	S	S			S							T	T				T	T	S		G	G	G	T	T
Template Predicted Secondary structure					.	.	.
Template SS confidence
		10	.	.				.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		C	M	V	F	Q	S	Y	A	L	F	P	H	M	S	L	G	E	N	V	G	Y	G	L	K	M	L	G	V	P	R	A	E	L	K	A	R	V	K	E	A	L	A	M	V	D	L	E	G	F	E	D	R	F	V	D	Q	I	S	G	G	Q	Q	Q	R	V	A	L	A	R	A	L	I	L	K	P	K	V	L	L	F
Query Conservation
Alig confidence							.	.	.	.	.	.														.	.
Template Conservation							.	.	.	.	.	.														.	.
Template Sequence		S	M	V	F	Q	.	.	.	.	.	.	H	M	T	V	Y	E	N	I	A	F	P	L	K	.	.	K	F	P	K	D	E	I	D	K	R	V	R	W	A	A	E	L	L	Q	I	E	E	L	L	N	R	Y	P	A	Q	L	S	G	G	Q	R	Q	R	V	A	V	A	R	A	I	V	V	E	P	D	V	L	L	M
Template Known Secondary structure							.	.	.	.	.	.										T	T			.	.																		T	T		G	G	G	T	T			G	G	G			S	S												T	T			S
Template Predicted Secondary structure							.	.	.	.	.	.														.	.
Template SS confidence
		87	.	.	90	.							.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		D	E	P	L	S	N	L	D	A	N	L	R	R	S	M	R	D	K	I	R	E	L	Q	K	Q	F	D	I	T	S	L	Y	V	T	H	D	Q	S	E	A	F	A	V	S	D	T	V	L	V	M	N	K	G	H	I	M	Q	I	G	S	P	Q	D	L	Y	R	Q	P	A	S	R	F	M	A	S	F	M	G	D	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		D	E	P	L	S	N	L	D	A	K	L	R	V	A	M	R	A	E	I	K	K	L	Q	Q	K	L	K	V	T	T	I	Y	V	T	H	D	Q	V	E	A	M	T	M	G	D	R	I	A	V	M	N	R	G	Q	L	L	Q	I	G	S	P	T	E	V	Y	L	R	P	N	S	V	F	V	A	T	F	I	G	A	P
Template Known Secondary structure			S	T	T	T	T	S																												S										S							T	T														S		S	B							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.					.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure		.																									.	.	.	.																											.	.	.
Query SS confidence		.																									.	.	.	.																											.	.	.
Query Sequence		.	A	N	L	F	P	A	T	F	S	D	G	Y	V	D	I	Y	G	Y	H	L	P	R	P	L	.	.	.	.	H	F	G	T	Q	G	E	G	M	V	G	V	R	P	E	A	I	T	L	S	D	R	G	E	E	S	.	.	.	Q	R	C	V	I	R	H	V	A	Y	M	G	P	Q	Y	E	V	T	V	E	W	H
Query Conservation		.																									.	.	.	.																											.	.	.
Alig confidence		.																									.	.	.	.																											.	.	.
Template Conservation
Template Sequence		E	M	N	I	L	E	V	S	V	G	D	G	Y	L	E	G	R	G	F	R	I	E	L	P	Q	M	D	L	L	K	D	Y	V	G	K	T	V	L	F	G	I	R	P	E	H	M	T	V	E	G	V	H	M	K	R	T	A	R	L	I	G	K	V	D	F	V	E	A	L	G	T	D	T	I	L	H	V	K	F	G
Template Known Secondary structure												S	S					T	T										T	T	G	G	G	B	T	S								G	G	G				S					S	S															S	S									T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	E	I	L	L	Q	V	N	A	T	R	L	Q	P	D	V	G	E	Q	Y	Y	L	E	I	H	P	Y	G	M	F	V	L	A	D	A
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence		D	E	L	V	K	V	K	L	P	.	G	H	I	P	I	E	P	G	R	E	V	K	V	I	M	D	L	D	M	I	H	V	F	D	K	D
Template Known Secondary structure		T									.	S						T	T									G	G	G						T	T
Template Predicted Secondary structure											.
Template SS confidence
		333	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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