Return to main results Retrieve Phyre Job Id

Job DescriptionP37009
Confidence100.00%DateThu Jan 5 11:54:22 GMT 2012
Rank7Aligned Residues339
% Identity35%Templatec1oxtB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:abc transporter, atp binding protein; PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10...... ...20.........30.........40.........50.........60.........70......
Predicted Secondary structure 




..






























..
Query SS confidence 















. .



























































. .
Query Sequence  MTQKNFVELRNVTKRF. . GSNTVIDNINLTIPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFIDGEDVTHRSIQ. .
Query Conservation 
     
 
  
   
..     
  


 
  


  
 
 








  
 
   
  
 
 
 
         ..
Alig confidence 


...









..



























































..
Template Conservation 
  ...
 
  
   
       
  


 
  

   
 
 








  
 
      
 
   
  
        
Template Sequence  MVR. . . IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV
Template Known Secondary structure 


...GGGT
TT


TTSSTSS

STTTTSS
Template Predicted Secondary structure 

...






























Template SS confidence 















































































   1.. ......10.........20.........30.........40.........50.........60.........70.......
 
   77..80.........90.........100.........110.........120.........130.........140.........150...
Predicted Secondary structure  ...



































Query SS confidence  . . .












































































Query Sequence  . . . QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPRAELKARVKEALAMVDLEGFEDRFVDQISGGQQQRVALARALIL
Query Conservation  ...      
           
  
                      
    
          

 

 


 




  
Alig confidence  ...












































































Template Conservation        
        
    

                              
          

 
  


 




  
Template Sequence  PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVK
Template Known Secondary structure 
GGGS

TT



TTS
GGGTTSS

TT
GGGTTS
GGGS
TT
Template Predicted Secondary structure 










































Template SS confidence 















































































   78.80.........90.........100.........110.........120.........130.........140.........150.......
 
   154.....160.........170.........180.........190.........200.........210.........220.........230...
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  KPKVLLFDEPLSNLDANLRRSMRDKIRELQKQFDITSLYVTHDQSEAFAVSDTVLVMNKGHIMQIGSPQDLYRQPASRFM
Query Conservation   
 








 

      
   
  
    
 


 


   
    



 

  
 

  
   

   
     
Alig confidence 















































































Template Conservation   
 








 

      
   
  
    
 


 


   
    



 

  
 

  
   

   
     
Template Sequence  DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV
Template Known Secondary structure 

SSSSSSS


S

STT
S
SS
Template Predicted Secondary structure 
























Template SS confidence 















































































   158.160.........170.........180.........190.........200.........210.........220.........230.......
 
   234.....240.........250.........260.........270.........280........ .290.........300.......
Predicted Secondary structure 


























......



Query SS confidence 






















































. . . . . .


















Query Sequence  ASFMGDANLFPATFSDGYVDIYGYHLPRPLHFGTQGEGMVGVRPEAITLSDRGEE. . . . . . SQRCVIRHVAYMGPQYEVT
Query Conservation 
   
                                    


  
 
      ......     
      
    
 
Alig confidence 





























...





















......


















Template Conservation 
   
                         ...        

   
                 
 
             
Template Sequence  ASLIGEINELEGKVTNEGVVIGSLRFPVSV. . . SSDRAIIGIRPEDVKLSKDVIKDDSWILVGKGKVKVIGYQGGLFRIT
Template Known Secondary structure  S


SSSTTS


...SSS
GGGSS



TTTT
Template Predicted Secondary structure 
















...





















Template SS confidence 















































































   238.240.........250.........260....... ..270.........280.........290.........300.........310....
 
   308.310.........320.........330.........340......
Predicted Secondary structure 














Query SS confidence 






































Query Sequence  VEWHGQEILLQVNATRLQPDVGEQYYLEIHPYGMFVLAD
Query Conservation      
                
  
 
            
Alig confidence 












.
























Template Conservation               .       
  
 
      
  

 
Template Sequence  ITPLDSEEEIFTY. SDHPIHSGEEVLVYVRKDKIKVFEK
Template Known Secondary structure  TT



.SS


TT
GGG

Template Predicted Secondary structure 



.












Template SS confidence 






































   315....320....... ..330.........340.........350..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions