Job Description P32674 Confidence 100.00% Date Thu Jan 5 11:50:01 GMT 2012 Rank 3 Aligned Residues 753 % Identity 38% Template c2f3oB_ PDB info PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	I	S	R	L	K	T	A	L	F	A	N	T	R	E	I	S	L	E	R	A	L	L	Y	T	A	S	H	R	Q	T	E	G	E	P	V	I	L	R	R	A	K	A	T	A	Y	I	L	E	H	V	E	I	S	I	R	D	E	E	L	I	A	G	N	R	T	V	K	P	R	A	G	I	M	S	P	E	M	D
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence		D	R	I	E	K	L	I	K	K	.	V	S	K	P	A	R	L	S	V	E	R	C	R	L	Y	T	E	S	M	K	Q	T	E	G	E	P	M	I	I	R	Q	A	K	A	L	K	H	V	L	E	N	I	P	I	Q	I	L	D	S	E	L	I	V	G	T	M	L	P	N	P	P	G	A	I	I	F	P	E	G	V
Template Known Secondary structure										T	.	T	T	S																			S	T	T	S																	S						T	T		S	S				S	S	S	S	S	S						T	T	T	T
Template Predicted Secondary structure											.
Template SS confidence
		4	.	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	W	L	L	K	E	L	D	Q	F	P	T	R	P	Q	D	R	F	A	I	S	E	E	D	K	R	I	Y	R	E	E	L	F	P	Y	W	E	K	R	S	M	K	D	F	I	N	G	Q	M	T	D	E	V	K	A	A	T	N	T	Q	I	F	S	I	N	Q	T	D	K	G	Q	G	H	I	I	I	D	Y	P
Query Conservation
Alig confidence																																																																					.
Template Conservation																																																																					.
Template Sequence		G	L	R	I	I	N	E	L	D	S	L	P	N	R	E	T	N	R	L	M	V	D	E	E	D	A	K	V	L	R	E	E	I	A	P	Y	W	Q	R	K	T	I	E	A	F	A	F	P	L	M	P	D	I	M	Q	I	L	Y	T	G	S	V	F	V	L	T	E	.	I	A	G	I	S	H	V	A	V	N	Y	P
Template Known Secondary structure		T					T	T	T	T	T	G	G	G		S	S	S			B			S								T	T						T	T		S						G	G	G	S									T	S	S	S					G	.	G	G
Template Predicted Secondary structure																																																																					.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180									.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.
Query Sequence		R	L	L	N	H	G	L	G	E	L	V	A	Q	M	Q	Q	H	C	.	.	.	.	.	.	.	.	Q	Q	Q	P	E	N	H	F	Y	Q	A	A	L	L	L	L	E	A	S	Q	K	H	I	L	R	Y	A	E	L	A	E	T	M	A	A	N	C	T	D	A	Q	R	R	E	E	L	L	T	I	A	E	I	S	R
Query Conservation																				.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.																																						.
Template Conservation																																																																	.
Template Sequence		Y	L	L	R	R	G	F	R	W	F	L	E	E	S	E	R	R	I	R	A	L	E	E	S	G	V	Y	E	G	E	K	Y	S	F	Y	Q	A	A	K	I	V	S	E	A	V	I	N	Y	G	L	R	Y	S	K	L	A	E	E	L	A	E	S	E	.	D	G	E	R	R	E	E	L	L	K	I	A	E	I	C	R
Template Known Secondary structure					T	T																			T	T	S																																			T	T	S	.
Template Predicted Secondary structure																																																																	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		H	N	A	Q	H	K	P	Q	T	F	W	Q	A	C	Q	L	F	W	Y	M	N	I	I	L	Q	Y	E	S	N	A	S	S	L	S	L	G	R	F	D	Q	Y	M	L	P	F	Y	Q	T	S	L	T	Q	G	E	.	D	A	A	F	L	K	E	L	L	E	S	L	W	V	K	C	N	D	I	V	L	L	R	S	T
Query Conservation																																																								.
Alig confidence																																																								.
Template Conservation
Template Sequence		K	V	P	A	E	K	P	E	T	F	W	E	A	V	Q	F	V	W	L	V	Q	S	A	L	H	Q	E	N	Y	E	Q	A	I	S	M	G	R	I	D	Q	Y	L	Y	P	F	F	K	K	D	I	G	E	G	R	I	N	R	E	L	A	F	D	I	L	A	N	L	W	I	K	T	N	E	I	V	P	A	F	D	S
Template Known Secondary structure			T	T	T	S				S																			S		S	S						S					S								T	T	T	T	S	S																T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	A	R	Y	F	A	G	F	P	T	G	Y	T	A	L	L	G	G	L	T	E	N	G	R	S	A	V	N	V	L	S	F	L	C	L	D	A	Y	Q	S	V	Q	L	P	Q	P	N	L	G	V	R	T	N	A	L	I	D	T	P	F	L	M	K	T	A	E	T	I	R	F	G	T	G	I	P	Q	I	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	E	Q	Y	F	S	G	Q	A	T	N	Q	A	V	T	I	G	G	C	D	I	Y	G	N	D	A	T	N	E	L	T	Y	L	M	L	E	V	T	D	R	L	R	L	R	Q	P	N	V	H	V	R	I	N	K	G	S	P	E	S	F	L	K	R	L	A	E	A	I	S	S	G	C	N	N	L	A	L	F	F
Template Known Secondary structure							S	T	T	T											B		T	T	S		B																			S		S								T	T	S														T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.												.	.	.	.	.	.	460	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	E	V	V	V	P	A	F	L	N	R	G	V	S	L	E	D	A	R	D	Y	S	V	V	G	C	V	E	L	S	I	P	G	R	T	Y	G	L	H	D	I	A	M	F	N	L	L	K	V	M	E	I	C	L	H	E	N	E	G	N	.	.	.	.	.	.	.	.	.	.	.	A	A	L	T	Y	E	G	L	L
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	D	A	A	V	K	A	L	K	N	A	E	V	D	D	R	D	A	L	N	Y	T	T	D	G	C	V	E	I	A	P	F	G	N	S	F	T	S	S	D	A	A	L	I	N	V	A	K	A	L	E	Y	A	L	N	E	G	V	D	L	Q	F	G	Y	E	F	G	A	K	T	E	K	P	K	F	L	E	D	L	L
Template Known Secondary structure												T	T								T					T	T	T					S	S	S					T	T	S														T	T	T	B		T	T	T			B		S								S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	I	R	A	K	I	S	H	Y	I	T	L	M	V	E	G	S	N	I	C	D	I	G	H	R	D	W	A	P	V	P	L	L	S	S	F	I	S	D	C	L	E	K	G	R	D	I	T	D	G	G	A	R	Y	N	F	S	G	V	Q	G	I	G	I	A	N	L	S	D	S	L	H	A	L	K	G	M	V	F
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		E	K	L	R	E	Q	V	S	H	I	V	K	L	V	V	R	G	S	N	V	L	S	Y	A	N	A	E	V	K	P	T	P	L	L	S	L	C	V	E	D	C	F	E	K	G	V	D	V	S	R	G	G	A	R	Y	N	F	T	G	I	Q	A	V	G	I	A	D	V	G	D	S	L	V	A	I	E	G	A	L	.
Template Known Secondary structure																																						T	S	T	T					T			T	T	T	T		S	S																										.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	Q	R	L	S	F	D	E	L	L	S	V	L	K	A	N	F	A	T	P	E	G	E	K	V	R	A	R	L	I	N	R	F	E	K	Y	G	N	D	I	D	E	V	D	N	I	S	A	E	L	L	R	H	Y	C	K	E	V	E	K	Y	Q	N	P	R	G	G	Y	F	T	P	G	S	Y	T	V	S	A	H
Query Conservation
Alig confidence		.																				.	.											.
Template Conservation		.																				.	.											.
Template Sequence		.	N	A	G	Y	S	M	D	D	I	V	E	A	C	R	K	N	F	V	G	.	.	Y	E	K	L	H	K	L	L	L	Q	.	S	P	K	Y	G	N	D	D	D	A	A	D	K	Y	T	K	M	V	L	E	W	Y	C	E	E	V	N	R	H	R	N	F	R	G	G	K	F	A	A	G	C	Y	P	M	T	T	N
Template Known Secondary structure		.		T	T												T	T	T	S	S	.	.											.	S			T	T	S	S																					T		B		T	T	S	S									T	T
Template Predicted Secondary structure		.																				.	.											.
Template SS confidence
			560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.			.	580	.	.	.	.	.	.	.	.		.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
		623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	L	G	S	V	V	G	A	T	P	D	G	R	F	A	G	E	Q	L	A	D	G	G	L	S	P	M	L	G	Q	D	A	Q	G	P	T	A	V	L	K	S	V	S	K	L	D	N	T	L	L	S	N	G	T	L	L	N	V	K	F	T	P	A	T	L	E	G	E	A	G	L	R	K	L	A	D	F	L	R
Query Conservation
Alig confidence																								.																																												.
Template Conservation																								.																																												.
Template Sequence		V	G	F	G	F	F	T	S	A	L	P	S	G	R	K	S	G	E	P	L	N	P	.	G	V	S	P	S	T	G	M	D	R	E	G	V	T	A	V	I	N	S	A	S	K	L	S	Y	E	N	L	P	N	G	A	S	L	T	I	N	L	S	S	D	V	L	.	G	E	K	G	D	A	V	I	E	A	L	I	K
Template Known Secondary structure												T	T	S			T	T						.	T	T	S			T	T				S		S								T	T	S		G	G	G		T	T														.		S
Template Predicted Secondary structure																								.																																												.
Template SS confidence
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.		.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700		.	.	.	.	.	.	.	.	.	710	.	.	.
		703	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	T	Q	L	K	L	Q	H	I	Q	F	N	V	V	N	A	D	T	L	R	E	A	Q	Q	R	P	Q	D	Y	A	G	L	V	V	R	V	A	G	Y	S	A	F	F	V	E	L	S	K	E	I	Q	D	D	I	I	R	R	T	A	H	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	S	M	E	L	G	V	M	H	V	Q	F	N	I	L	K	E	D	L	L	R	K	A	Q	Q	E	P	E	K	Y	R	W	L	L	V	R	V	A	G	W	S	A	Y	F	V	E	L	S	R	P	V	Q	E	E	V	I	R	R	I	S	C	R	I
Template Known Secondary structure						T	T		S																T	T		G	G	G	G	T	T						S	S	S				G	G	G	S										T	T		B
Template Predicted Secondary structure
Template SS confidence
		714	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.