 |
Job Description | Q47622 | Confidence | 40.40% | Date | Thu Jan 5 12:36:57 GMT 2012 |
Rank | 49 | Aligned Residues | 107 |
% Identity | 14% | Template | d2p0la1 |
SCOP info | Class II aaRS and biotin synthetases
| Class II aaRS and biotin synthetases
| LplA-like
|
Resolution | 2.04 |
|
 |
  |   |
325 | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | |
|
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
| . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
Query Sequence |   |
Q | R | L | M | Q | S | I | Y | Y | G | T | A | E | T | A | A | S | I | L | P | R | A | S | W | A | Y | D | N | E | A | K | I | T | E | Y | N | P | A | K | S | R | E | Q | L | K | S | L | G | L | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | L | T | L | K | L | W | V | P | T | R | S | Q | A | W | N | . |
. |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
Template Conservation |   |
|   |
|
|   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|   |   |   |
|
|
|
|
|
|   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |
|
|   |
|
|
|
|   |
|
|
|
|
|
|   |
|
|   |
|   |
|
|   |
|   |
|   |
|   |   |   |   |   |
Template Sequence |   |
E | V | F | L | R | E | I | N | R | S | N | Q | E | I | I | L | H | I | W | P | X | T | K | T | V | I | L | G | X | L | D | R | E | L | P | H | L | E | L | A | K | K | E | I | I | S | R | G | Y | E | P | V | V | R | N | F | G | G | L | A | V | V | A | D | E | G | I | L | N | F | S | L | V | I | P | D | V | F | L | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | S |
| S |
|  |  |  |  |  |
|
| B | S | S |  |  |  |  |
| T | T | G | G | G |
| T | T |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |
| T | T |
|
| S |
|  |  |  | S | T | T |  |  |  |  |  |  |  |  |  | S |
|
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
34 | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . |
  |
  |   |
|
|
391 | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . |
Predicted Secondary structure |   |
. | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
P | S | P | L | K | T | A | E | L | I | Q | A | D | M | A | Q | V | G | V | K | V | V | I | V | P | V | E | G | R | F | Q | E | A | R | L | M | D | M | S | H | D | L | T | L | S | G |
Query Conservation |   |
. | . |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
Alig confidence |   |
. | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|
|   |
|   |   |   |
|
|   |   |
| . | . | . | . | . |   |
|
|
|   |   |
|
|   |
|   |
|
Template Sequence |   |
I | S | D | G | Y | L | I | X | V | D | F | I | R | S | I | F | S | D | F | Y | Q | P | I | E | H | F | E | V | E | T | S | . |
. |
. |
. |
. |
Y | C | P | G | K | F | D | L | S | I | N | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | S |
| S |
|
|  |  |
|
|
| T | T | S | . | . | . | . | . | S | S |
|
| T | T |
|  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
117 | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 150 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|