Job Description Q47622 Confidence 100.00% Date Thu Jan 5 12:36:57 GMT 2012 Rank 8 Aligned Residues 487 % Identity 21% Template d1xoca1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.55

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	I	R	D	S	G	F	V	Y	C	V	S	G	Q	V	N	T	F	N	P	S	K	A	S	S	G	L	I	V	D	T	L	A	A	Q	F	Y	D	R	L	L	D	V	D	P	Y	T	Y	R	L	M	P	E	L	A	E	S	W	E	V	L	D	N	G	A	T	Y	R	F	H	L	R	R	D	V	P	F	Q	K
Query Conservation
Alig confidence																																	.																.
Template Conservation																																	.																.
Template Sequence		K	P	Q	Q	G	G	D	L	V	V	G	S	I	G	E	P	T	L	F	N	S	L	Y	S	T	D	D	A	S	T	D	.	I	E	N	M	L	Y	S	F	L	T	K	T	D	E	K	.	L	N	V	K	L	S	L	A	E	S	I	K	E	L	D	G	G	L	A	Y	D	V	K	I	K	K	G	V	K	F	H	D
Template Known Secondary structure														S	S					S		T	T	T			S						.									S					T	T	.	S					S	S								G	G	G	T								S	S		B		T	T
Template Predicted Secondary structure																																	.																.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	W	F	T	P	T	R	K	M	N	A	D	D	V	V	F	T	F	Q	R	I	F	D	R	N	N	P	W	H	N	V	N	G	S	N	F	P	Y	F	D	S	L	Q	F	A	D	N	V	K	S	V	R	K	L	D	N	H	T	V	E	F	R	L	A	Q	P	D	A	S	F	L	W	H	L	A	T	H	Y	A
Query Conservation
Alig confidence				.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation				.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																																				.
Template Sequence		G	K	.	.	.	.	.	.	E	L	T	A	D	D	V	V	F	T	Y	S	V	P	L	S	K	D	Y	K	G	E	R	G	.	.	.	.	.	.	.	.	.	.	.	S	T	Y	E	M	L	K	S	V	E	K	K	G	D	Y	E	V	L	F	K	L	K	Y	K	D	G	N	F	Y	N	N	A	L	D	S	.	T
Template Known Secondary structure		S		.	.	.	.	.	.	B												G	G	G	S	T	T				S		G	.	.	.	.	.	.	.	.	.	.	.	G	G	T	T	T									T	T							S	S			T					T					.
Template Predicted Secondary structure				.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																																				.
Template SS confidence
		95	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120												.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.
		189	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		S	V	M	S	A	E	Y	A	R	K	L	E	K	.	.	E	D	R	Q	E	Q	L	D	R	Q	P	V	G	T	G	P	Y	Q	L	S	E	Y	R	A	G	Q	F	I	R	L	Q	R	H	D	D	F	W	R	G	K	P	L	M	P	Q	V	V	V	D	L	G	S	G	G	T	G	R	L	S	K	L	L	T	G	E
Query Conservation															.	.
Alig confidence															.	.
Template Conservation
Template Sequence		A	I	L	P	K	H	I	L	G	N	V	P	I	A	D	L	E	E	N	E	F	N	R	K	K	P	I	G	S	G	P	F	K	F	K	E	W	K	Q	G	Q	Y	I	K	L	E	A	N	D	D	Y	F	E	G	R	P	Y	L	D	T	V	T	Y	K	V	I	P	D	A	N	A	A	E	A	Q	L	Q	A	G	D
Template Known Secondary structure										T	T	S		G	G	G	T	T	T	S	G	G	G	T	T					S	S	S								T	T	T								T	T		T	T				S	S	S								S												T	S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	D	V	L	A	W	P	A	A	S	Q	L	S	I	L	R	D	D	P	R	L	R	L	T	L	R	P	G	M	N	V	A	Y	L	A	F	N	T	A	K	P	P	L	N	N	P	A	V	R	H	A	L	A	L	A	I	N	N	Q	R	L	M	Q	S	I	Y	Y	G	T	A	E	T	A	A	S	I	L	P	R	A
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		I	N	F	F	N	.	V	P	A	T	D	Y	K	T	A	E	K	F	N	N	L	K	I	V	T	D	L	A	L	S	Y	V	Y	I	G	W	N	E	K	N	E	L	F	K	D	K	K	V	R	Q	A	L	T	T	A	L	D	R	E	S	I	V	S	Q	V	L	D	G	D	G	E	V	A	Y	I	P	E	S	P	L
Template Known Secondary structure				B			.			G	G	G					T	T	S	T	T									S									T	T	S	G	G	G												T											S	T	T		S					S	S	S		T	T
Template Predicted Secondary structure							.
Template SS confidence
		237	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		347	.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.										.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure									.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence									.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		S	W	A	Y	D	N	E	.	.	A	K	I	T	E	Y	N	P	A	K	S	R	E	Q	L	K	S	L	G	L	E	N	L	T	L	.	.	.	.	.	.	.	.	.	K	L	W	V	P	T	R	S	Q	A	W	N	P	S	P	L	K	T	A	E	L	I	Q	A	D	M	A	Q	V	G	V	K	V	V	I	V	P
Query Conservation									.	.																										.	.	.	.	.	.	.	.	.
Alig confidence									.	.																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	W	N	Y	P	K	D	I	D	V	P	K	F	E	Y	N	E	K	K	A	K	Q	M	L	A	E	A	G	W	K	D	T	N	G	D	G	I	L	D	K	D	G	K	K	F	S	F	T	L	K	T	N	Q	G	N	K	V	R	E	D	I	A	V	V	V	Q	E	Q	L	K	K	I	G	I	E	V	K	T	Q	I
Template Known Secondary structure		S	T	T	S		T	T																				T	T		B		S	S	S	S	S	S				T	T											T	T																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.			430	.	.	.	.	.	.	.	.		.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure																.	.										.
Query SS confidence																.	.										.
Query Sequence		V	E	G	R	F	Q	E	A	R	L	M	D	M	S	.	.	H	D	L	T	L	S	G	W	A	.	T	D	S	N	D	P	D	S	F	F	R	P	L	L	S	C	A	A	I	H	S	Q	T	N	L	A	H	W	C	D	P	K	F	D	S	V	L	R	K	A	L	S	S	Q	Q	L	A	A	R	I	E	A	Y	D
Query Conservation																.	.										.
Alig confidence																.	.										.																.	.	.	.
Template Conservation																																											.	.	.	.
Template Sequence		V	E	W	S	A	L	V	E	Q	M	N	P	P	N	W	D	F	D	A	M	V	M	G	W	S	L	S	T	F	P	D	Q	Y	D	I	F	H	S	S	Q	I	.	.	.	.	K	K	G	L	N	Y	V	W	Y	K	N	A	E	A	D	K	L	M	K	D	A	K	S	I	S	D	R	K	Q	Y	S	K	E	Y	E
Template Known Secondary structure												S	T	T	T				S										S	S			T					S	G	G	G	T	.	.	.	.	T	T	S	S		T	T															T	T			S
Template Predicted Secondary structure																																											.	.	.	.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.					.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.		530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		E	A	Q	S	I	L	A	Q	E	L	P	I	L	P	L	A	S	S	L	R	L	Q	A	Y	R	Y	D	I	K	G	L	V	L	S	P	F	G	.	N	A	S	F	A	G	V	Y	R	E	K
Query Conservation																																							.
Alig confidence																																							.
Template Conservation
Template Sequence		Q	I	Y	Q	K	I	A	E	D	Q	P	Y	T	F	L	Y	Y	P	N	N	H	M	A	M	P	E	N	L	E	G	Y	K	Y	H	P	K	R	D	L	Y	N	I	E	K	W	W	L	A	K
Template Known Secondary structure												S															T	T			S					S	S		T	T	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520