Job Description Q47622 Confidence 100.00% Date Thu Jan 5 12:36:57 GMT 2012 Rank 4 Aligned Residues 503 % Identity 22% Template d1jeta_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.20

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	E	S	P	P	H	A	D	I	R	D	S	G	F	V	Y	C	V	S	G	Q	V	N	T	F	N	P	S	K	A	S	S	G	L	I	V	D	T	L	A	A	Q	F	Y	D	R	L	L	D	V	D	P	Y	T	Y	R	L	M	P	E	L	A	E	S	W	E	V	L	D	N	G	A	T	Y	R	F	H	L	R
Query Conservation
Alig confidence																																								.																.													.
Template Conservation																																								.																.													.
Template Sequence		A	D	V	P	A	G	V	Q	L	A	D	K	Q	T	L	V	R	N	N	G	S	E	V	Q	S	L	D	P	H	K	I	E	G	V	P	E	S	N	.	V	S	R	D	L	F	E	G	L	L	I	S	D	V	E	.	G	H	P	S	P	G	V	A	E	K	W	E	.	N	K	D	F	K	V	W	T	F	H	L	R
Template Known Secondary structure						T	T			B		S	S								S	S			S		S	S	T	T	S			S						.									S					T	T	.						S	S						.			T	T	T
Template Predicted Secondary structure																																								.																.													.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.							.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.
Query Sequence		R	D	V	P	F	Q	K	T	D	W	F	T	P	T	R	K	M	N	A	D	D	V	V	F	T	F	Q	R	I	F	D	R	N	N	P	W	H	N	V	N	G	.	.	.	.	.	.	S	N	F	P	Y	F	D	S	L	Q	F	A	D	N	V	K	S	V	R	K	L	D	N	H	T	V	E	F	R	L	A	Q	P
Query Conservation																																											.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.																											.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.
Template Sequence		E	N	A	K	W	S	D	G	T	.	.	.	.	.	.	P	V	T	A	H	D	F	V	Y	S	W	Q	R	L	A	D	P	N	T	A	S	P	Y	A	S	Y	L	Q	Y	G	H	I	A	N	I	D	D	I	I	A	G	K	K	P	A	T	D	L	G	V	K	A	L	D	D	H	T	F	E	V	T	L	S	E	P
Template Known Secondary structure		T	T		B		T	T	S		.	.	.	.	.	.	B																G	G	G			T	T	T	T					T	T	B	T	T						T	T	S	S		G	G	G	S	S						T	T						B	S	S
Template Predicted Secondary structure											.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.							.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		D	A	S	F	L	W	H	L	A	T	H	Y	A	S	V	M	S	A	E	Y	A	R	K	L	E	K	E	D	R	Q	E	Q	L	D	R	Q	P	V	G	T	G	P	Y	Q	L	S	E	Y	R	A	G	Q	F	I	R	L	Q	R	H	D	D	F	W	R	.	G	K	P	L	M	P	Q	V	V	V	D	L	G	S	G
Query Conservation																																																																		.
Alig confidence																																	.	.	.																															.
Template Conservation																																	.	.	.
Template Sequence		V	P	Y	F	Y	K	L	L	V	H	P	S	V	S	P	V	P	K	S	A	V	E	K	F	G	D	K	W	T	Q	P	.	.	.	A	N	I	V	T	N	G	A	Y	K	L	K	N	W	V	V	N	E	R	I	V	L	E	R	N	P	Q	Y	W	D	N	A	K	T	V	I	N	Q	V	T	Y	L	P	I	S	S
Template Known Secondary structure			T	T					T	T	S	G	G	G	S											G	G	G	T	T	S	T	.	.	.	T	T					S	S								T	T	T								T	T	S	T	T	G	G	G
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		G	T	G	R	L	S	K	L	L	T	G	E	C	D	V	L	A	W	.	P	A	A	S	Q	L	S	I	L	R	D	D	P	R	L	R	L	T	L	R	P	G	M	N	V	A	Y	L	A	F	N	T	A	K	P	P	L	N	N	P	A	V	R	H	A	L	A	L	A	I	N	N	Q	R	L	M	Q	S	I	Y	Y
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		E	V	T	D	V	N	R	Y	R	S	G	E	I	D	M	T	Y	N	N	M	P	I	E	L	F	Q	K	L	K	K	E	I	P	N	E	V	R	V	D	P	Y	L	C	T	Y	Y	Y	E	I	N	N	Q	K	A	P	F	N	D	V	R	V	R	T	A	L	K	L	A	L	D	R	D	I	I	V	N	K	V	K	N
Template Known Secondary structure											T	T	S		S	B			S				T	T	T								S	G	G	G																T	T	S	T	T	T	T	S											S								T	T	T
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.						.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		G	T	A	E	T	A	A	S	I	L	P	R	A	S	W	A	Y	D	N	E	A	K	.	.	.	.	.	I	T	E	Y	N	P	A	K	S	R	E	Q	L	K	S	L	G	L	E	N	L	T	L	K	L	W	V	P	T	R	S	Q	A	W	N	P	S	P	L	K	T	A	E	L	I	Q	A	D	M	A	Q	V	G
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.																				.
Template Conservation																																																.
Template Sequence		Q	G	D	L	P	A	Y	S	Y	T	P	P	Y	T	D	G	A	K	L	V	E	P	E	W	F	K	W	S	Q	Q	K	R	N	E	E	A	K	K	L	L	A	E	A	G	F	T	.	A	D	K	P	L	T	F	D	L	L	Y	N	T	S	D	L	H	K	K	L	A	I	A	V	A	S	I	W	K	K	N	L	G
Template Known Secondary structure		S	S					S	S	S	S		T	T	S	T	T											S																T	T			.	S	S	S										S
Template Predicted Secondary structure																																																.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	V	V	I	V	P	V	E	G	R	F	Q	E	A	R	L	M	D	M	S	H	D	L	T	L	S	G	W	A	T	D	S	N	D	P	D	S	F	F	R	P	L	L	S	C	A	A	I	H	S	Q	T	N	L	A	H	W	C	D	P	K	F	D	S	V	L	R	K	A	L	S	S	Q	Q	L	A	A	R	I
Query Conservation
Alig confidence																																																.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		V	N	V	N	L	E	N	Q	E	W	K	T	F	L	D	T	R	H	Q	G	T	F	D	V	A	R	A	G	W	C	A	D	Y	N	E	P	T	S	F	L	N	T	M	L	S	D	.	.	.	.	S	S	N	N	T	A	H	Y	K	S	P	A	F	D	K	L	I	A	D	T	L	K	V	A	D	D	T	Q	R	S
Template Known Secondary structure																					T			S									S	S	S	S	T					G	G	G	S	T	T	.	.	.	.		T	T		T	T														T	T	T	S
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.					.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.		.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		E	A	Y	D	E	A	Q	S	I	L	A	Q	E	L	P	I	L	P	L	A	S	S	L	R	L	Q	A	Y	R	Y	D	I	K	G	L	V	L	S	.	P	F	G	N	A	S	F	A	G	V	Y	R	E	K	Q
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		E	L	Y	A	K	A	E	Q	Q	L	D	K	D	S	A	I	V	P	V	Y	Y	Y	V	N	A	R	L	V	K	P	W	V	G	G	Y	T	G	K	D	P	L	D	N	I	Y	V	K	N	L	Y	I	I	K	H
Template Known Secondary structure														T	T														B		T	T			S						T	T					G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.