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Job DescriptionQ47622
Confidence100.00%DateThu Jan 5 12:36:57 GMT 2012
Rank2Aligned Residues505
% Identity34%Templatec3tpaA_
PDB info PDB header:heme binding proteinChain: A: PDB Molecule:heme-binding protein a; PDBTitle: structure of hbpa2 from haemophilus parasuis
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50.........60.........70.........80.........90.........100.........110...
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Query Sequence  SGFVYCVSGQVNTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRRDVPFQKTDWFT
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Template Sequence  NTLVNCIATAPMKLSPAITNDANDFNASSQQVYNRLVEFKAGKIEVEPGLAERWEISEDGLVYTFYLRQNVKFHSNKTFS
Template Known Secondary structure 
SS

S
S
GGG
SSGGGGGGT


S
TTSSSSS
TTS

SS





SS

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   8.10.........20.........30.........40.........50.........60.........70.........80.......
 
   114.....120.........130.........140.........150.........160.........170.........180.........190...
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Query Sequence  PTRKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSVRKLDNHTVEFRLAQPDASFLWHLATHYASVMSA
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Template Sequence  PTRPLNADDVVFSFQRQADKNHPYHNVSAGTYFYFNWMNLPSILKSVEKVDDYTVKITLNKPNTPFITTVAMDFLSIYSK
Template Known Secondary structure 
SS



TTSTTTTGGG


TTTTSS

TTTTSGGG



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   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   194.....200.........210.........220.........230.........240.........250.........260.........270...
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Query Sequence  EYARKLEKEDRQEQLDRQPVGTGPYQLSEYRAGQFIRLQRHDDFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWP
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Template Sequence  EYADQLLAQGKPETLDQQPIGTGPFIFQTNQTDHAVRYTANVDYWKGKADIERLIFSITPDAGTRYAKLKAGECDVIDFP
Template Known Secondary structure  TT
TTS


SSS
SS

TT
TT
TT


S
S


TTS
SSS
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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   274.....280.........290.........300.........310.........320.........330.........340.........350...
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Query Sequence  AASQLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQSIYYGTAETAASILPRASWAYDNE
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Template Sequence  NISDIAQMKKDPQINLLEREGLNLAYIGLNTTKPELNNVKVRQALHHATDKKAIVDAVYQGGGTVATNPFPDAVLGYNPH
Template Known Secondary structure 
TT
TT
S
TTSTTTTST

TTS
SSSS
TTSTT

TT
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   248.250.........260.........270.........280.........290.........300.........310.........320.......
 
   354.....360.........370.... .....380.........390.........400.........410.........420.........430..
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Query Sequence  AKITEYNPAKSREQLKSLGLE. NLTLKLWVPTRSQAWNPSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDL
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Template Sequence  LPQYEFNLEKAKALLAEAGYPNGFETEIWVQPVVRPSNPNPRRTAEIIQADWAKIGVKAKLVTHEWADFNKRTREGEFAA
Template Known Secondary structure 






TT
TT


SS
BTTBS
TT


TT

S
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   328.330.........340.........350.........360.........370.........380.........390.........400.......
 
   433......440.........450.........460.........470.........480.........490.........500.........510..
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Query Sequence  TLSGWATDSNDPDSFFRPLLSCAAIHSQTNLAHWCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQELPILPLASSLR
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Template Sequence  GTYGWTSRNGDPDNFLFPLFSQ. ANIPGTNYSRWTDEKFEALLASAAQIQDTQTRAKLYQQAVEIFQQNSPIIPFAHSIN
Template Known Secondary structure 
SS

T
G.GGTTTT
TT



T



S
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   408.410.........420......... 430.........440.........450.........460.........470.........480......
 
   513......520.........530.........
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Query Sequence  LQAYRYDIKGLVLSPFGNASFAGVYRE
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Template Conservation         
 
      
      
 
 
Template Sequence  YVPLNKRVQGFVQNPFGYTAFYGVSLK
Template Known Secondary structure  TTS



TT




TT

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   487..490.........500.........510...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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