Job Description Q47622 Confidence 100.00% Date Thu Jan 5 12:36:57 GMT 2012 Rank 18 Aligned Residues 465 % Identity 18% Template c3ry3B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative solute-binding protein; PDBTitle: putative solute-binding protein from yersinia pestis. Resolution 2.43 Å

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		35	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		G	F	V	Y	C	V	S	G	Q	V	.	N	T	F	N	P	S	K	A	S	S	G	L	I	V	D	T	L	A	A	Q	F	Y	D	R	L	L	D	V	D	P	Y	T	Y	R	L	M	P	E	L	A	E	S	W	E	V	L	D	N	G	A	T	Y	R	F	H	L	R	R	D	V	P	F	Q	K	T	D	W	F	T
Query Conservation												.
Alig confidence												.																	.	.	.	.											.																																				.	.	.
Template Conservation																													.	.	.	.											.																																				.	.	.
Template Sequence		T	L	Q	L	A	I	G	D	E	P	T	E	G	F	D	P	X	L	G	W	S	H	G	S	Y	L	L	.	.	.	.	L	H	S	P	L	L	K	Q	N	E	.	D	F	S	W	D	S	L	L	L	S	Q	Y	Q	P	S	D	D	G	K	T	W	L	L	T	L	K	P	D	L	K	F	S	D	G	S	.	.	.
Template Known Secondary structure								S				S	S				G	G	G		S	S	S	S	T				.	.	.	.					S					T	.	T	S					S	S								T	T	S	S								T	T		B		T	T	S		.	.	.
Template Predicted Secondary structure																													.	.	.	.											.																																				.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	R	K	M	N	A	D	D	V	V	F	T	F	Q	R	I	F	D	R	N	N	P	W	H	N	V	N	G	S	N	F	P	Y	F	D	S	L	Q	F	A	D	N	V	K	S	V	R	K	L	D	N	H	T	V	E	F	R	L	A	Q	P	D	A	S	F	L	W	H	L	A	T	H	Y	A	S	V	M	S	A
Query Conservation
Alig confidence		.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	P	L	T	A	K	D	V	A	F	T	Y	N	N	A	A	A	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	X	G	N	F	L	S	A	E	V	I	D	P	L	N	V	R	I	H	L	K	A	P	Q	S	T	F	V	N	V	L	G	S	L	G	I	V	S	A	D	K
Template Known Secondary structure		.	.	.	B														T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S			S	S									T	T							S	S			T	T						T	T	S					S	T	T
Template Predicted Secondary structure		.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.																		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	A	R	K	L	E	K	E	D	R	Q	E	Q	L	D	R	Q	P	V	G	T	G	P	Y	Q	L	S	E	Y	R	A	G	Q	F	I	R	L	Q	R	H	D	D	F	W	R	G	K	P	L	M	P	Q	V	V	V	D	L	G	S	G	G	T	G	R	L	S	K	L	L	T	G	E	C	D	V	L	A	W	P
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.																																																				.
Template Conservation			.	.	.	.	.	.	.	.	.																																																				.
Template Sequence		Y	.	.	.	.	.	.	.	.	.	N	A	K	T	Y	A	Q	K	P	I	G	A	G	P	Y	R	L	V	S	F	Q	P	G	Q	Q	X	I	V	E	A	N	P	Y	Y	A	G	N	K	N	D	F	D	K	L	I	F	V	F	L	D	E	.	D	S	A	F	A	A	A	Q	S	G	Q	L	G	V	V	R	I	P
Template Known Secondary structure			.	.	.	.	.	.	.	.	.		T	T	T	T	T	T	S				S	S	S								T	T	T								T	T		S	S				S		S										.									T	T			S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.																																																				.
Template SS confidence
		164										.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		274	.	.	.	.	.	280	.	.											.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	S	Q	L	S	I	L	R	.	.	.	.	.	.	.	.	.	.	D	D	P	R	L	R	L	T	L	R	P	G	M	N	V	A	Y	L	A	F	N	T	A	K	P	P	L	N	N	P	A	V	R	H	A	L	A	L	A	I	N	N	Q	R	L	M	Q	S	I	Y	Y	G	T	A	E	T	A	A	S	I	L
Query Conservation											.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	S	X	A	V	G	S	V	N	N	X	K	L	W	V	R	P	S	V	E	N	R	G	I	V	F	P	T	T	P	A	G	K	K	D	A	H	G	Y	P	I	G	N	D	V	T	A	D	V	A	I	R	R	A	I	N	Y	A	I	N	R	Q	L	L	A	D	Q	I	X	E	G	H	A	I	P	A	Y	T	G	V
Template Known Secondary structure		T	T	S						T	T								B											S		S					T	T	S						T	T	T	T	S																					S	T	T						S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.									.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.
Query Sequence		P	R	A	S	W	A	Y	D	N	E	A	K	I	T	E	Y	N	P	A	K	S	R	E	Q	L	K	S	L	G	L	E	N	L	T	L	.	.	.	.	.	.	.	.	K	L	W	V	P	T	R	S	Q	A	W	N	P	S	P	L	K	T	A	E	L	I	Q	A	D	M	A	Q	V	G	V	K	V	V	I	V	P
Query Conservation																																					.	.	.	.	.	.	.	.
Alig confidence								.																													.	.	.	.	.	.	.	.
Template Conservation								.
Template Sequence		Q	G	L	P	W	N	.	N	P	D	S	A	I	K	D	G	D	I	D	K	A	K	Q	I	L	E	Q	A	G	W	Q	L	N	S	Q	G	T	R	E	K	N	G	L	P	A	K	I	T	L	W	Y	T	S	G	D	T	T	R	R	D	L	A	Q	A	L	R	S	X	L	K	P	I	G	I	D	V	D	L	K	S
Template Known Secondary structure		T	T	S	T	T	S	.		T	T						S												T	T					T	T	S	S				T	T											S	S																G	G	G	T
Template Predicted Secondary structure								.
Template SS confidence
		314	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	G	R	F	Q	E	A	R	L	M	D	M	S	H	D	L	T	L	S	G	W	A	T	D	S	N	D	P	D	S	F	F	R	P	L	L	S	C	A	A	I	H	S	Q	T	N	L	A	H	W	C	D	P	K	F	D	S	V	L	R	K	A	L	S	S	Q	Q	L	A	A	R	I	E	A	Y	D	E	A	Q
Query Conservation
Alig confidence											.	.	.													.	.
Template Conservation											.	.	.													.	.
Template Sequence		G	S	W	E	T	V	E	R	N	.	.	.	X	H	A	N	P	T	L	F	G	W	G	S	.	.	L	D	P	X	E	L	Y	H	H	Y	S	S	N	A	A	G	V	E	Y	Y	N	P	G	Y	Y	K	N	P	X	V	D	K	H	L	Q	Q	A	L	D	A	P	T	W	Q	Q	A	V	P	F	W	Q	Q	V	D
Template Known Secondary structure											.	.	.	T	T	T	S									.	.	S	S	T									G	G	G	T	T	S	T	T	S	S	T	T																		S	S										T	T	T
Template Predicted Secondary structure											.	.	.													.	.
Template SS confidence
		393	.	.	.	.	.	.	400	.				.	.	.	.	.	.	.	.	410	.	.	.			.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
								496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	S	I	L	A	Q	E	L	P	I	L	P	L	A	S	S	L	R	L	Q	A	Y	R	Y	D	I	K	G	L	V	L	S	P	F	G	N	A	S	F	A	G	V	Y	R	E	K	Q	D	E
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		W	D	G	T	T	G	A	G	I	R	G	D	A	A	W	A	W	L	L	N	I	Q	H	T	Y	L	A	N	N	C	V	D	L	G	K	G	T	P	E	I	H	G	S	W	S	L	L	N	S	I	D	S	W	K
Template Known Secondary structure				S	S			S	S	T	T	T	T																	T	T							S		B		S	S	T	T	G	G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.