Job Description Q47622 Confidence 100.00% Date Thu Jan 5 12:36:57 GMT 2012 Rank 16 Aligned Residues 458 % Identity 18% Template c3rqtA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: 1.5 angstrom crystal structure of the complex of ligand binding2 component of abc-type import system from staphylococcus aureus with3 nickel and two histidines Resolution 1.50 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	G	F	V	Y	C	V	S	G	Q	V	N	T	F	N	P	S	K	A	S	S	G	L	I	V	D	T	L	A	A	Q	F	Y	D	R	L	L	D	V	D	P	Y	T	Y	R	L	M	P	E	L	A	E	S	W	E	V	L	D	N	G	A	T	Y	R	F	H	L	R	R	D	V	P	F	Q	K	T	D	W	F
Query Conservation
Alig confidence																						.	.	.	.	.																			.															.																				.	.
Template Conservation																						.	.	.	.	.																			.															.																				.	.
Template Sequence		G	K	D	L	N	I	S	L	P	L	K	T	K	S	I	A	P	Y	E	T	.	.	.	.	.	D	V	P	V	K	I	G	A	A	E	S	L	F	K	T	N	D	Q	.	G	K	I	E	K	A	L	V	K	S	Y	H	Q	P	.	N	D	T	T	L	D	I	E	L	K	D	N	I	K	F	Q	N	G	Q	.	.
Template Known Secondary structure										S	S			S				T	T	T		.	.	.	.	.	S					T	T	S		B		S					T	T	.	S					S	S								.		T	T								S	S		B		T	T	S		.	.
Template Predicted Secondary structure																						.	.	.	.	.																			.															.																				.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.						.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	T	R	K	M	N	A	D	D	V	V	F	T	F	Q	R	I	F	D	R	N	N	P	W	H	N	V	N	G	S	N	F	P	Y	F	D	S	L	Q	F	A	D	N	V	K	S	V	R	K	L	D	N	H	T	V	E	F	R	L	A	Q	P	D	A	S	F	L	W	H	L	A	T	H	Y	A	S	V	M	S
Query Conservation
Alig confidence		.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	K	L	T	A	E	K	V	K	S	S	L	E	N	S	X	K	K	S	D	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	S	L	P	I	S	S	I	T	A	K	G	Q	K	L	T	I	K	T	N	S	A	Y	P	E	L	V	S	E	L	A	N	P	F	X	A	I	Y	D
Template Known Secondary structure		.	.	.	.	B																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T							S	S			T	T					T	T	S	G	G	G		B
Template Predicted Secondary structure		.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.																.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	Y	A	R	K	L	E	K	E	D	R	Q	E	Q	L	D	R	Q	P	V	G	T	G	P	Y	Q	L	S	E	Y	R	A	G	Q	F	I	R	L	Q	R	H	D	D	F	W	R	G	K	P	L	M	P	Q	V	V	V	D	L	G	S	G	G	T	G	R	L	S	K	L	L	T	G	E	C	D	V	L	A	W
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.
Template Sequence		T	D	.	.	.	.	.	.	.	.	.	A	K	S	D	V	N	Q	T	P	V	G	T	G	P	Y	Q	I	K	D	Y	K	Q	S	R	K	I	S	L	S	N	F	K	D	Y	W	Q	G	K	P	K	L	D	H	I	T	V	T	Y	Q	E	D	G	N	N	R	V	R	N	L	E	S	Q	K	D	D	L	I	T	D
Template Known Secondary structure		T	T	.	.	.	.	.	.	.	.	.		S	S		T	T	T	S				S	S	S								T	T	T								T	T		T	T	S			S		S																			T	T	S		S				S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.
Template SS confidence
		137	.										.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	A	S	Q	L	S	I	L	R	D	D	P	R	L	R	L	T	L	R	P	G	M	N	V	A	Y	L	A	F	N	T	A	K	P	P	L	N	N	P	A	V	R	H	A	L	A	L	A	I	N	N	Q	R	L	M	Q	S	I	Y	Y	G	T	A	E	T	A	A	S	I	L	P	R	A	S	W	A	Y	D	N
Query Conservation
Alig confidence																																				.
Template Conservation																																				.
Template Sequence		V	P	V	N	K	V	Q	D	I	E	N	N	Q	N	L	K	V	S	K	E	S	G	F	R	T	S	L	L	X	Y	N	H	T	N	.	K	K	X	T	K	S	V	R	E	A	L	D	H	I	I	D	R	Q	G	I	A	D	H	I	Y	Q	G	Y	A	K	P	A	T	S	P	F	N	D	K	I	P	Y	I	K	E
Template Known Secondary structure				G	G	G								T	T																		T	T	S	.	T	T																						T	S	T	T	S					S	S	S	S		T	T	S	T	T
Template Predicted Secondary structure																																				.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	K	I	T	E	Y	N	P	A	K	S	R	E	Q	L	K	S	L	G	L	E	N	L	T	L	K	L	W	V	P	T	R	S	Q	A	W	N	P	S	P	L	K	T	A	E	L	I	Q	A	D	M	A	Q	V	G	V	K	V	V	I	V	P	V	E	G	R	F	Q	E	A	R	L	M	D	M	S	H	D	L
Query Conservation
Alig confidence		.																						.
Template Conservation		.																						.
Template Sequence		.	P	K	L	T	K	Q	N	I	E	Q	A	K	X	L	L	A	K	D	G	Y	T	.	K	E	H	P	L	K	I	K	L	I	T	Y	D	G	R	P	E	L	S	K	I	A	Q	V	L	Q	S	D	A	K	K	A	N	I	E	I	D	I	K	S	V	D	D	I	E	G	Y	L	K	D	R	S	A	W	D	A	T
Template Known Secondary structure		.																	T	T	T			.	S	S	S										S	S	S	T															T	T	T									S						T	T		T	T	S		S
Template Predicted Secondary structure		.																						.
Template SS confidence
			287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	S	G	W	A	T	D	S	N	D	P	D	S	F	F	R	P	L	L	S	C	A	A	I	H	S	Q	T	N	L	A	H	W	C	D	P	K	F	D	S	V	L	R	K	A	L	S	S	Q	Q	L	A	A	R	I	E	A	Y	D	E	A	Q	S	I	L	A	Q	E	L	P	I	L	P	L	A	S	S	L	R
Query Conservation
Alig confidence																								.	.	.
Template Conservation																								.	.	.
Template Sequence		X	Y	S	F	G	T	I	P	R	G	D	T	G	Y	F	F	N	Q	A	Y	K	K	.	.	.	D	G	A	I	N	K	G	D	Y	N	N	S	N	V	D	D	L	I	N	Q	L	N	H	T	V	D	V	K	E	R	H	N	I	S	N	D	I	I	K	L	S	S	R	D	V	P	N	S	Y	I	A	Y	N	D	Q
Template Known Secondary structure							S		T	T	S		T								T	S	T	.	.	.	T		T	T		T	T																T																							S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.				.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	A	Y	R	Y	D	I	K	G	L	V	L	S	P	F	G	N	A	S	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	A	A	N	S	K	V	K	N	Y	K	V	T	P	E	G	I	Y	L	I
Template Known Secondary structure							T	T								T	T	S
Template Predicted Secondary structure
Template SS confidence
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.