Job Description Q47622 Confidence 100.00% Date Thu Jan 5 12:36:57 GMT 2012 Rank 20 Aligned Residues 213 % Identity 17% Template c3pamB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:transmembrane protein; PDBTitle: crystal structure of a domain of transmembrane protein of abc-type2 oligopeptide transport system from bartonella henselae str. houston-1 Resolution 2.31 Å

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		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	Y	L	A	F	N	T	A	K	P	P	L	N	N	P	A	V	R	H	A	L	A	L	A	I	N	N	Q	R	L	M	Q	S	I	Y	Y	G	T	A	E	T	A	A	S	I	L	P	R	A	S	W	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	X	G	F	V	F	N	T	R	R	T	L	F	K	D	K	R	V	R	Q	A	L	S	I	L	F	D	F	E	W	V	N	H	H	L	F	N	N	I	Y	T	R	T	E	G	Y	W	D	G	S	I	L	S	S	I	G	K	P	A	S	E	E	E	K	A	L	L	A	P	Y	P	D	A	V	L	P	E	V	X	D
Template Known Secondary structure									T	T	S	G	G	G	S	S																				T	T	T	T							S	S	S	T	T	S	T	T			S	S	S											T	T		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.							.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence		Y	D	N	E	A	K	I	T	E	Y	N	P	A	K	S	R	E	Q	L	K	S	L	G	L	E	N	L	T	L	K	L	W	.	.	.	.	.	.	V	P	T	R	S	Q	A	W	N	P	S	P	L	K	T	A	E	L	I	Q	A	D	M	A	Q	V	G	V	K	V	V	I	V	P	V	E	G	R	F	Q	E	A
Query Conservation																																		.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	W	R	I	S	K	D	R	L	N	A	Q	K	A	W	K	L	L	Q	E	A	G	F	T	K	K	N	N	R	L	I	A	P	N	G	L	P	F	Q	F	E	I	X	T	Q	S	L	E	E	E	K	V	A	L	A	F	Q	S	N	L	S	R	L	G	I	H	A	E	I	R	T	V	D	D	S	Q	Y	Q	N
Template Known Secondary structure		T																					T	T					T	T					T	T	S		B								S	S																T	T	T
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.		.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		R	L	M	D	M	S	H	D	L	T	L	S	G	W	A	T	D	S	N	D	P	D	S	F	F	R	P	L	L	S	C	.	A	A	I	H	S	Q	T	N	L	A	H	W	C	D	P	K	F	D	S	V	L	R	K	A	L	S	S	Q	Q	L	A	A	R	I	E	A	Y	D	E	A	Q	S	I	L	A	Q	E	L
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		R	L	G	X	F	N	Y	D	X	I	I	G	K	L	K	N	S	L	S	P	G	N	E	Q	I	N	R	W	S	S	A	S	R	N	L	K	G	S	F	N	F	S	G	A	S	D	P	A	I	D	A	X	I	T	A	I	L	D	A	H	S	Q	V	D	F	I	A	A	V	R	A	L	D	R	I	L	I	S	G	S
Template Known Secondary structure						T			S										S	S			T	T											T		T	T		S		T	T																			S																			T
Template Predicted Secondary structure
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
		503	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	L	P	L	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	Y	I	P	L	Y	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		566	.	.	.	570	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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