Job Description Q47622 Confidence 100.00% Date Thu Jan 5 12:36:57 GMT 2012 Rank 6 Aligned Residues 493 % Identity 19% Template c3o9pA_ PDB info PDB header:peptide binding protein/peptide Chain: A: PDB Molecule:periplasmic murein peptide-binding protein; PDBTitle: the structure of the escherichia coli murein tripeptide binding2 protein mppa Resolution 2.07 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	D	S	G	F	V	Y	C	V	S	G	Q	V	N	T	F	N	P	S	K	A	S	S	G	L	I	V	D	T	L	A	A	Q	F	Y	D	R	L	L	D	V	D	P	Y	T	Y	R	L	M	P	E	L	A	E	S	W	E	V	L	D	N	G	A	T	Y	R	F	H	L	R	R	D	V	P	F	Q	K	T	D
Query Conservation
Alig confidence																															.															.														.
Template Conservation																															.															.														.
Template Sequence		A	E	K	Q	E	L	V	R	H	I	K	D	E	P	A	S	L	D	P	A	K	A	V	G	L	P	E	I	Q	.	V	I	R	D	L	F	E	G	L	V	N	Q	N	E	.	K	G	E	I	V	P	G	V	A	T	Q	W	K	.	S	N	D	N	R	I	W	T	F	T	L	R	D	N	A	K	W	A	D	G	T
Template Known Secondary structure			S									S	S			S		S		T	T	T			S						.									S					T	.	T	S					S	S						.		S	S	S	S								T	T		B		T	T	S
Template Predicted Secondary structure																															.															.														.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.							.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.
Query Sequence		W	F	T	P	T	R	K	M	N	A	D	D	V	V	F	T	F	Q	R	I	F	D	R	N	N	P	W	H	N	V	N	G	S	N	F	P	Y	F	D	S	L	.	.	.	.	.	.	Q	F	A	D	N	V	K	S	V	R	K	L	D	N	H	T	V	E	F	R	L	A	Q	P	D	A	S	F	L	W	H	L	A
Query Conservation																																											.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																				.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	P	V	T	A	Q	D	F	V	Y	S	W	Q	R	L	V	D	P	K	T	L	S	P	F	A	W	F	A	A	L	A	G	I	N	N	A	Q	A	I	I	D	G	K	A	T	P	D	Q	L	G	V	T	A	V	D	A	H	T	L	K	I	Q	L	D	K	P	L	P	W	F	V	N	L	T	A
Template Known Secondary structure		.	.	.	.	.	.	B																G	G	G			T	T	T							T	B	T	T						T	T	S	S		G	G	G	S	S						T	T						B	S	S			T	T						T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		T	H	Y	A	S	V	M	S	A	E	Y	A	R	K	L	E	K	E	D	R	Q	E	Q	L	D	R	Q	P	V	G	T	G	P	Y	Q	L	S	E	Y	R	A	G	Q	F	I	R	L	Q	R	H	D	D	F	W	R	G	.	K	P	L	M	P	Q	V	V	V	D	L	G	S	G	G	T	G	R	L	S	K	L	L
Query Conservation																																																										.
Alig confidence																							.	.	.	.																																.
Template Conservation																							.	.	.	.
Template Sequence		N	F	A	F	F	P	V	Q	K	A	N	V	E	S	G	K	E	W	T	K	P	.	.	.	.	G	N	L	I	G	N	G	A	Y	V	L	K	E	R	V	V	N	E	K	L	V	V	V	P	N	T	H	Y	W	D	N	A	K	T	V	L	Q	K	V	T	F	L	P	I	N	Q	E	S	A	A	T	K	R	Y	L
Template Known Secondary structure		S	G	G	G										T		T	T	T	T	S	T	.	.	.	.	T	T				S	S	S								T	T	T								T	T	S	T	T	G	G	G				S
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.					.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	E	C	D	V	L	A	W	P	A	A	S	Q	L	S	I	L	R	D	D	P	R	L	R	L	T	L	R	P	G	M	N	V	A	Y	L	A	F	N	T	A	K	P	P	L	N	N	P	A	V	R	H	A	L	A	L	A	I	N	N	Q	R	L	M	Q	S	I	Y	Y	G	T	A	E	T	A	A	S	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	D	I	D	I	T	E	S	F	P	K	N	M	Y	Q	K	L	L	K	D	I	P	G	Q	V	Y	T	P	P	Q	L	G	T	Y	Y	Y	A	F	N	T	Q	K	G	P	T	A	D	Q	R	V	R	L	A	L	S	M	T	I	D	R	R	L	M	T	E	K	V	L	G	T	G	E	K	P	A	W	H	F	T
Template Known Secondary structure			T	S		S	B		S				G	G	G								S	T	T	S																T	T	S	S	G	G	G	S											S									T	T		S	S					S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.						.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		P	R	A	S	W	A	Y	D	N	E	A	K	.	.	.	.	.	I	T	E	Y	N	P	A	K	S	R	E	Q	L	K	S	L	G	L	E	N	L	T	L	K	L	W	V	P	T	R	S	Q	A	W	N	P	S	P	L	K	T	A	E	L	I	Q	A	D	M	A	Q	V	G	V	K	V	V	I	V	P	V	E	G
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.																				.
Template Conservation																																						.
Template Sequence		P	D	V	T	A	G	F	T	P	E	P	S	P	F	E	Q	M	S	Q	E	E	L	N	A	Q	A	K	T	L	L	S	A	A	G	Y	G	.	P	Q	K	P	L	K	L	T	L	L	Y	N	T	S	E	N	H	Q	K	I	A	I	A	V	A	S	M	W	K	K	N	L	G	V	D	V	K	L	Q	N	Q	E	W
Template Known Secondary structure			T	T	S	T	T											S																	T		B	.	T	T	B										S
Template Predicted Secondary structure																																						.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	Q	E	A	R	L	M	D	M	S	H	D	L	T	L	S	G	W	A	T	D	S	N	D	P	D	S	F	F	R	P	L	L	S	C	A	A	I	H	S	Q	T	N	L	A	H	W	C	D	P	K	F	D	S	V	L	R	K	A	L	S	S	Q	Q	L	A	A	R	I	E	A	Y	D	E	A	Q	S	I	L
Query Conservation
Alig confidence																																						.	.	.	.
Template Conservation																																						.	.	.	.
Template Sequence		K	T	Y	I	D	S	R	N	T	G	N	F	D	V	I	R	A	S	W	V	G	D	Y	N	E	P	S	T	F	L	T	L	L	T	S	T	.	.	.	.	H	S	G	N	I	S	R	F	N	N	P	A	Y	D	K	V	L	A	Q	A	S	T	E	N	T	V	K	A	R	N	A	D	Y	N	A	A	E	K	I	L
Template Known Secondary structure								T	T	S	S			S									S	S	S	S	T					G	G	G	S	T	T	.	.	.	.		T	T		T	T															T	T			S
Template Predicted Secondary structure																																						.	.	.	.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.					.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.		.	.	.	.	.	540	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		A	Q	E	L	P	I	L	P	L	A	S	S	L	R	L	Q	A	Y	R	Y	D	I	K	G	L	V	L	S	P	F	G	N	A	S	F	A	.	G	V	Y	R	E	K	Q
Query Conservation																																						.
Alig confidence																																						.
Template Conservation
Template Sequence		M	E	Q	A	P	I	A	P	I	Y	Q	Y	T	N	G	R	L	I	K	P	W	L	K	G	Y	P	I	N	N	P	E	D	V	A	Y	S	R	T	M	Y	I	V	K	H
Template Known Secondary structure						S													B		T	T						T	T		T	T					G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.