Job Description Q47622 Confidence 100.00% Date Thu Jan 5 12:36:57 GMT 2012 Rank 21 Aligned Residues 213 % Identity 24% Template c3o6pA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; PDBTitle: crystal structure of peptide abc transporter, peptide-binding protein Resolution 1.65 Å

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		294	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.									.	.	.	.	360	.	.	.
Predicted Secondary structure															.	.																																																		.	.	.	.	.	.	.	.
Query SS confidence															.	.																																																		.	.	.	.	.	.	.	.
Query Sequence		G	M	N	V	A	Y	L	A	F	N	T	A	K	.	.	P	P	L	N	N	P	A	V	R	H	A	L	A	L	A	I	N	N	Q	R	L	M	Q	S	I	Y	Y	G	T	A	E	T	A	A	S	I	L	P	R	A	S	W	A	Y	D	N	E	A	K	.	.	.	.	.	.	.	.	I	T	E	Y	N	P	A	K
Query Conservation															.	.																																																		.	.	.	.	.	.	.	.
Alig confidence															.	.																																																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	S	T	Q	Y	X	E	L	N	Q	R	D	E	K	S	P	F	R	N	A	N	L	R	K	A	I	S	Y	S	I	D	R	K	A	L	V	E	S	I	L	G	D	G	S	I	E	P	N	G	L	V	P	A	D	X	A	K	D	P	S	G	G	K	D	F	A	K	E	A	G	S	Q	I	E	Y	D	T	K	K
Template Known Secondary structure														S	T	T		G	G	G											T									T	T	T		S	S		B			S	S	S	S		T	T	S		B		S	S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.			.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		S	R	E	Q	L	K	S	L	G	L	E	N	L	T	L	K	L	W	V	P	T	R	S	Q	A	W	N	P	S	P	L	K	T	A	E	L	I	Q	A	D	M	A	Q	V	.	.	G	V	K	V	V	I	V	P	V	E	G	R	F	Q	E	A	R	L	M	D	M	S	H	D	L	T	L	S	G	W	A	T	D	S
Query Conservation																																														.	.
Alig confidence																												.																		.	.
Template Conservation																												.
Template Sequence		A	K	E	Y	W	E	K	A	K	K	E	L	G	I	S	T	L	T	X	D	I	L	S	S	D	A	.	D	S	S	K	K	T	V	E	F	V	Q	G	S	I	Q	D	A	L	D	G	V	K	V	T	V	S	P	V	P	F	S	V	R	L	D	R	S	N	K	G	D	F	D	A	V	I	G	G	W	S	A	D	Y
Template Known Secondary structure														T		S											S	.																		S	T	T																				T			S									S	S
Template Predicted Secondary structure																												.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.		.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480			.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		N	D	P	D	S	F	F	R	P	L	L	S	C	A	A	I	H	S	Q	T	N	L	A	H	W	C	D	P	K	F	D	S	V	L	R	K	A	L	S	.	.	S	Q	Q	L	A	A	R	I	E	A	Y	D	E	A	Q	S	I	L	A	Q	E	L	P	I	L	P	L	A	S	S	L
Query Conservation																																									.	.
Alig confidence															.	.	.	.																							.	.
Template Conservation															.	.	.	.
Template Sequence		A	D	P	S	S	F	L	D	L	F	A	S	D	.	.	.	.	N	S	Y	N	R	G	R	Y	N	N	A	E	F	D	K	F	V	K	A	A	S	S	A	D	A	T	D	P	E	K	R	W	D	D	X	L	N	A	E	K	T	I	X	G	D	X	G	V	V	P	L	F	Q	K	S
Template Known Secondary structure		S		T					G	G	G	S	T	T	.	.	.	.		T	T		T	T																S	T	T																					T	T	S	S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		459	460	.	.	.	.	.	.	.	.	.	470	.					.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions