Job Description Q47622 Confidence 100.00% Date Thu Jan 5 12:36:57 GMT 2012 Rank 15 Aligned Residues 502 % Identity 16% Template c3ftoA_ PDB info PDB header:peptide binding protein Chain: A: PDB Molecule:oligopeptide-binding protein oppa; PDBTitle: crystal structure of oppa in a open conformation Resolution 2.38 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.
Query Sequence		P	E	S	P	P	H	A	D	I	R	D	S	G	F	V	Y	C	V	S	G	Q	V	N	T	F	N	P	S	K	A	S	S	G	L	I	V	D	T	L	A	A	.	.	.	.	.	Q	F	Y	D	R	L	L	D	V	D	P	Y	T	Y	R	L	M	P	E	L	A	E	S	W	E	V	L	D	N	G	A	T	Y	R
Query Conservation																																											.	.	.	.	.
Alig confidence																																							.				.	.	.	.	.												.
Template Conservation																																							.																				.
Template Sequence		A	Y	Q	N	P	D	K	A	I	K	G	G	N	L	K	V	A	Y	Q	S	D	S	P	X	K	A	Q	W	L	S	G	L	S	N	D	A	T	.	F	A	T	X	S	G	P	G	G	G	Q	D	G	L	F	F	T	D	S	.	G	F	K	F	I	K	G	G	A	A	D	V	A	L	D	K	E	S	K	T	A	T
Template Known Secondary structure		B				S	S				S	S										S	S							S	T	T	T						.					T	G	G	G	T	T	T	T	B						T	.	T	S	B			S		S	S							T	T	T	T
Template Predicted Secondary structure																																							.																				.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170
Predicted Secondary structure																																																.	.	.	.																							.	.	.
Query SS confidence																																																.	.	.	.																							.	.	.
Query Sequence		F	H	L	R	R	D	V	P	F	Q	K	T	D	W	F	T	P	T	R	K	M	N	A	D	D	V	V	F	T	F	Q	R	I	F	D	R	N	N	P	W	H	N	V	N	G	S	.	.	.	.	N	F	P	Y	F	D	S	L	Q	F	A	D	N	V	K	S	V	R	K	L	D	N	.	.	.	H	T	V	E	F
Query Conservation																																																.	.	.	.																							.	.	.
Alig confidence															.	.	.	.	.	.																												.	.	.	.																							.	.	.
Template Conservation															.	.	.	.	.	.
Template Sequence		I	T	L	R	K	D	L	K	W	S	D	G	S	.	.	.	.	.	.	E	V	T	A	K	D	Y	E	F	T	Y	E	T	I	A	N	P	A	Y	G	S	D	R	W	T	D	S	L	A	N	I	V	G	L	S	D	Y	H	T	G	K	A	K	T	I	S	G	I	T	F	P	D	G	E	N	G	K	V	I	K	V
Template Known Secondary structure						T	T		B		T	T	S		.	.	.	.	.	.	B																G	G	G			S				G	G	G	G	G	B	T	T						T	T	S		S	S		T	T				T	T		T	T	S	S
Template Predicted Secondary structure															.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.							.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																				.										.	.
Query SS confidence																				.										.	.
Query Sequence		R	L	A	Q	P	D	A	S	F	L	W	H	L	A	T	H	Y	A	.	S	V	M	S	A	E	Y	A	R	.	.	K	L	E	K	E	D	R	Q	E	Q	L	D	R	Q	P	V	G	T	G	P	Y	Q	L	S	E	Y	R	A	G	Q	F	I	R	L	Q	R	H	D	D	F	W	R	G	K	P	L	M	P	Q	V
Query Conservation																				.										.	.
Alig confidence																				.										.	.
Template Conservation
Template Sequence		Q	F	K	E	X	K	P	G	X	T	Q	S	G	N	G	Y	F	L	E	T	V	A	P	Y	Q	Y	L	K	D	V	A	P	K	D	L	A	S	S	P	K	T	T	T	K	P	L	V	T	G	P	F	K	P	E	N	V	V	A	G	E	S	I	K	Y	V	P	N	P	Y	Y	W	G	E	K	P	K	L	N	S	I
Template Known Secondary structure			B	S	S			G	G	G	G	B	T	T		S	S	S			B								T	T	S		G	G	G	T	T	T	S	G	G	G	T	T	S					S	S								T	T	T								T	T		S	S				S		S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.														.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	D	L	G	S	G	G	T	G	R	L	S	K	L	L	T	G	E	C	D	V	L	A	W	P	A	A	S	Q	L	S	I	L	R	D	D	P	R	L	R	L	T	L	R	P	G	M	N	V	A	Y	L	A	F	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	P	P	L	N	N	P	A	V
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		T	Y	E	V	V	S	T	.	A	K	S	V	A	A	L	S	S	S	K	Y	D	I	I	N	G	X	V	S	S	Q	Y	K	Q	V	K	N	L	K	G	Y	K	V	L	G	Q	Q	A	X	Y	I	S	L	X	Y	Y	N	L	G	H	Y	D	A	K	N	S	I	N	V	Q	D	R	K	T	P	L	Q	D	Q	N	V
Template Known Secondary structure									.									T	T			S							G	G	G						T		T	T									S														T	T	T	T									G	G	G	S
Template Predicted Secondary structure									.
Template SS confidence
		254	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.			.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.										.	.	.	.	.	380	.	.	.
Predicted Secondary structure																																												.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		R	H	A	L	A	L	A	I	N	N	Q	R	L	M	Q	S	I	Y	Y	G	T	A	E	T	A	A	S	I	L	P	R	A	S	W	A	Y	D	N	E	A	K	I	.	.	T	E	Y	N	P	A	K	S	R	E	Q	L	K	S	L	G	L	E	.	.	.	.	.	.	.	.	.	N	L	T	L	K	L	W	V	P
Query Conservation																																												.	.																			.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Q	A	I	G	Y	A	R	N	V	A	E	V	D	N	K	F	S	N	G	L	S	T	P	A	N	S	L	I	P	P	I	F	K	Q	F	T	S	S	S	V	K	G	Y	E	K	Q	D	L	D	K	A	N	K	L	L	D	E	D	G	W	K	L	N	K	S	T	G	Y	R	E	K	D	G	K	E	L	S	L	V
Template Known Secondary structure																			T	T	T	S					S	S	S	S		T	T	S	T	T	S			T	T				S	S	S												T	T	T					S	S	S	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.								.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.
Query Sequence		T	R	S	Q	A	W	N	P	S	P	L	K	T	A	E	L	I	Q	A	D	M	A	Q	V	G	V	K	V	V	I	V	P	V	E	G	R	F	Q	E	A	R	L	.	.	.	.	.	.	.	M	D	M	S	H	D	L	T	L	S	G	W	A	T	D	S	N	D	P	D	S	F	F	R	P	L	L	S	C	A	A
Query Conservation																																												.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.
Template Sequence		Y	A	A	R	V	G	D	A	N	A	E	T	I	A	Q	N	Y	I	Q	Q	W	K	K	I	G	V	K	V	S	L	Y	N	G	K	L	X	E	F	N	S	W	V	D	H	X	T	T	P	P	G	A	N	D	W	D	I	T	D	G	S	W	S	L	A	S	E	P	S	Q	Q	D	L	F	.	.	.	.	.	.	S
Template Known Secondary structure					B	S		S	T	T															T	T						G	G	G	S		B											S	T	T			S	S		S										S	S								.	.	.	.	.	.	S
Template Predicted Secondary structure																																																																											.	.	.	.	.	.
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.							.
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480			.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		I	H	S	Q	T	N	L	A	H	W	C	D	P	K	F	D	S	V	L	R	K	A	L	S	.	.	S	Q	Q	L	A	A	R	I	E	A	Y	D	E	A	Q	S	I	L	A	Q	E	L	P	I	L	P	L	A	S	S	L	R	L	Q	A	Y	R	Y	D	I	K	G	L	V	L	S	P	F	G	N	A	S	F	A
Query Conservation																										.	.
Alig confidence																										.	.
Template Conservation
Template Sequence		A	A	A	P	Y	N	F	G	H	F	N	D	S	E	I	T	K	D	L	N	D	I	D	S	A	K	S	E	N	P	T	Y	R	K	A	A	F	V	K	Y	Q	E	D	X	N	K	K	A	Y	V	I	P	T	N	F	X	L	N	Y	T	P	V	N	K	R	V	V	G	X	T	L	D	Y	G	A	X	N	T	W	S
Template Known Secondary structure		T	T		T	T		T	T															T	S	G	G	G	G	S																				S															T	T			S		B			T	T		S
Template Predicted Secondary structure
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
		535	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	Y	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	G	V	S
Template Known Secondary structure						S
Template Predicted Secondary structure
Template SS confidence
		567	.	.	570	.