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Job DescriptionQ47622
Confidence100.00%DateThu Jan 5 12:36:57 GMT 2012
Rank7Aligned Residues506
% Identity20%Templatec2wokA_
PDB info PDB header:peptide binding protein/peptideChain: A: PDB Molecule:clavulanic acid biosynthesis oligopeptide PDBTitle: clavulanic acid biosynthesis oligopeptide2 binding protein 2 complexed with bradykinin
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   16...20.........30.........40.........50.........60.........70....... ..80...... ...90
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Query Sequence  SGQAIAAPESPPHADIRDSGFVYCVSGQVNTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTY. . . . RLMPELAES. WEVL
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Template Sequence  AGWDAGVGALVNPSRRRGGTLRLVSSADVDSLDPARTYYVWVWL. LQRLLNRTLMAYPTDPGPAGLVPAPDLAEGPGEVS
Template Known Secondary structure  S
TTTTSSS
BS





SSS

S
SSTTS


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S

S
SSGGGGS
SSBSSS
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   15....20.........30.........40.........50........ .60.........70.........80.........90...
 
   91........100.........110.........120.........130.........140... ......150.........160...
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Query Sequence  DNGATYRFHLRRDVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGS. . . . . . . NFPYFDSLQFADNVKSVRKL
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Template Sequence  DGGRTWTYRLRRGLRYDDGT. . . . . . PITSDDVRHAVQRVFAQDVLPGGPTYLIPLLDDPERPYPGPYRTDEPLRSVLTP
Template Known Secondary structure  GGGTB
SS
B
TTS
......B

TT
TTTSTTS

T
BTTB



TTT

S

TT
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   94.....100.........110... ......120.........130.........140.........150.........160.......
 
   164.....170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  DNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPYQLSEYRAGQFIRLQRHDDFWRG. . .
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Template Sequence  DEHTIVFRLTRPFSDFDHLMAQPCAAPVPRRSD. . . . . . . TGADYGRDPRSSGPYRVARHEPDTLLHLERNPHWDRATDP
Template Known Secondary structure  TT
SS

TTTSGGGS


GGG
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GGGGGGS



SSTTT
TT

GGG
S
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   168.170.........180.........190.........200 .........210.........220.........230.........240
 
   241........250.........260.........270.........280...... ...290.........300.........310...
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Query Sequence  . . KPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAASQLSILRDDPR. . . . . LRLTLRPGMNVAYLAFNTAKPPLNNPA
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Template Sequence  IRPALPDRVELTIGLDVDVLDARLIAGEFDINLEGRGLQHAAQRRATADEVLRSHTDNPRTSFLHFVAMQPHIPPFDNVH
Template Known Secondary structure  S




S


TTSSSSS





TT


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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   314.....320.........330..... ....340.........350.. .......360.........370.........380......
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Query Sequence  VRHALALAINNQRLMQSIYYGT. . AETAASILPRASWAYDN. . . . . EAKITEYNPAKSREQLKSLGLENLTLKLWVPTRS
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Template Sequence  VRRAVQYAADKILLQDARGGPVNGGDLTTALFPPTLPAHQDLDLYPTGPDLRGDLDAARAELAAAGLPDG. . . . . FRAVI
Template Known Secondary structure 

TTTTTSS

SSSS
TTSTT




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TTSS

TT
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   321........330.........340.........350.........360.........370.........380.........390 .....
 
   387..390.........400.........410.........420.. .......430.........440.........450..... .
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Query Sequence  QAWNPSPLKTAELIQADMAQVGVKVVIVPVEGRFQE. . . . . . . ARLMDMSHDLTLSGWATDSNDPDSFFRPLLSCA. . . A
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Template Sequence  GTQRGKFRLVADAVVESLARVGIELTVKELDVATYFSLGAGHPETVREHGLGLLVTDWGADFPTEYGFLAPLVDGRQIKR
Template Known Secondary structure 
TTTTT

STT




TT
TT

SSSS
GGG

T
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   396...400.........410.........420.........430.........440.........450.........460.........470.....
 
   457..460.........470.........480.........490.........500.........510.........520....... ..530.....
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Query Sequence  IHSQTNLAHWCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQELPILPLASSLRLQAYRYDIKGLVLSP. FGNASFAG
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Template Sequence  NGGNWNLPELDDPEVNALIDETLHTTDPAARAELWRAVERRVMEHAVLLPLVHDKTLHFRNPWVTNVYVHPAFGLYDIQA
Template Known Secondary structure  TS



TT



T


T




TTSB
B
TTTSSB
GGG
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   476...480.........490.........500.........510.........520.........530.........540.........550.....
 
   536...540
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Query Sequence  VYREK
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Template Sequence  MGLAE
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   556...560
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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