Job Description Q47622 Confidence 100.00% Date Thu Jan 5 12:36:57 GMT 2012 Rank 14 Aligned Residues 481 % Identity 16% Template c2grvC_ PDB info PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw Resolution 2.40 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.								.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																							.																						.	.	.	.	.	.	.															.
Query SS confidence																							.																						.	.	.	.	.	.	.															.
Query Sequence		S	G	F	V	Y	C	V	S	G	Q	V	N	T	F	N	P	S	K	A	S	S	.	G	L	I	V	D	T	L	A	A	Q	F	Y	D	R	L	L	D	V	D	P	Y	.	.	.	.	.	.	.	T	Y	R	L	M	P	E	L	A	E	S	W	E	V	.	L	D	N	G	A	T	Y	R	F	H	L	R	R	D	V
Query Conservation																							.																						.	.	.	.	.	.	.															.
Alig confidence																							.																						.	.	.	.	.	.	.															.
Template Conservation
Template Sequence		T	Q	I	I	M	A	I	D	S	I	G	P	G	F	N	P	H	L	L	S	D	Q	S	P	V	N	A	A	I	A	S	L	V	L	P	S	S	F	R	P	V	P	D	P	T	S	P	T	G	S	R	W	E	L	D	T	T	L	L	E	S	A	E	V	T	Q	E	N	P	F	T	V	T	Y	K	I	R	P	E	A
Template Known Secondary structure									S				S		S		T	T	B	G	G	G		S											S			S							T	T	S	T	T	S							T	T	T									T	T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		P	F	Q	K	T	D	W	F	T	P	T	R	K	M	N	A	D	D	V	V	F	T	F	Q	R	I	F	D	R	N	N	P	W	H	N	V	N	G	S	N	F	P	Y	F	D	S	L	Q	F	A	D	N	V	K	S	V	R	K	L	.	D	N	H	T	V	E	F	R	L	A	Q	P	D	A	S	F	L	W	H	L
Query Conservation																																																													.
Alig confidence								.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation								.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	W	T	D	N	A	.	.	.	.	.	.	P	I	A	A	D	D	Y	W	Y	L	W	R	Q	M	V	S	Q	P	G	V	V	D	P	A	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	D	L	I	T	G	V	Q	S	V	E	G	G	K	Q	A	V	V	T	F	S	Q	P	Y	P	A	W	R	E	L	F
Template Known Secondary structure		B		T	T	S		.	.	.	.	.	.	B																	T	T	B	S			T	.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G								T	T	T	T							S	S			T	T	G	G	G	S	S
Template Predicted Secondary structure								.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.							.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.													.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		A	T	H	Y	A	S	V	M	S	A	E	Y	A	R	K	L	E	K	E	D	R	Q	E	Q	L	D	R	Q	P	V	G	T	G	P	Y	Q	L	S	E	Y	R	A	G	.	Q	F	I	R	L	Q	R	H	D	D	F	W	R	G	K	P	L	M	P	Q	V	V	V	D	L	G	S	G	G	T	G	R	L	S	K	L
Query Conservation																																													.
Alig confidence				.	.	.	.																																						.
Template Conservation				.	.	.	.
Template Sequence		N	D	.	.	.	.	I	L	P	A	H	I	V	K	D	I	P	G	G	F	G	A	G	L	A	R	A	M	P	V	T	G	G	Q	F	R	V	E	T	I	D	P	Q	R	D	E	I	L	L	A	R	N	D	R	F	W	S	V	P	A	K	P	D	L	V	L	F	R	R	G	G	A	P	A	A	L	A	D	S	I
Template Known Secondary structure			S	.	.	.	.								T	T	S	T	T					T	T	S	S				S			S	S								T	T	T	T								T	T		S	S	S			S		S									S
Template Predicted Secondary structure				.	.	.	.
Template SS confidence
		169	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		263	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.				.	.
Predicted Secondary structure											.																																																																		.	.	.
Query SS confidence											.																																																																		.	.	.
Query Sequence		L	T	G	E	C	D	V	L	A	.	W	P	A	A	S	Q	L	S	I	L	R	D	D	P	R	L	R	L	T	L	R	P	G	M	N	V	A	Y	L	A	F	N	T	A	K	P	P	L	N	N	P	A	V	R	H	A	L	A	L	A	I	N	N	Q	R	L	M	Q	S	I	Y	Y	G	T	A	.	.	.	E	T
Query Conservation											.																																																																		.	.	.
Alig confidence											.																																																																		.	.	.
Template Conservation
Template Sequence		R	N	G	D	T	Q	V	A	Q	V	H	G	G	A	A	T	F	A	Q	L	S	A	I	P	D	V	R	T	A	R	I	V	T	P	R	V	M	Q	L	T	L	R	A	Q	Q	P	K	L	A	D	P	Q	V	R	K	A	I	L	G	L	I	D	V	D	L	L	A	S	V	G	A	G	D	D	N	T	V	T	L	A
Template Known Secondary structure				T	S																		T	S	T	T																		T	T	S	G	G	G		S											S												S	S	S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.										.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.
Query Sequence		A	A	S	I	L	P	R	A	S	W	A	Y	D	N	E	A	K	I	T	E	Y	N	P	A	K	S	R	E	Q	L	K	S	L	G	L	E	N	.	.	.	.	.	.	.	.	.	L	T	L	K	L	W	V	P	T	R	S	Q	A	W	N	P	S	P	L	K	T	A	E	L	I	Q	A	D	M	A	Q	V	G	V
Query Conservation																																							.	.	.	.	.	.	.	.	.
Alig confidence																			.																				.	.	.	.	.	.	.	.	.
Template Conservation																			.
Template Sequence		Q	A	Q	V	R	S	P	S	D	P	G	Y	V	P	T	A	P	.	P	A	M	T	R	D	D	A	L	E	L	L	R	D	A	G	Y	V	S	E	P	V	R	E	R	I	V	K	D	G	V	P	L	T	I	V	L	G	V	A	S	N	D	P	T	S	V	A	V	A	N	T	A	A	D	Q	L	R	N	V	G	I
Template Known Secondary structure				S	S	S		T	T	S	T	T							.															T	T													T	T											T	T																		T	T
Template Predicted Secondary structure																			.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		K	V	V	I	V	P	V	E	G	R	F	Q	E	A	R	.	L	M	D	M	S	H	D	L	T	L	S	G	W	A	T	D	S	N	D	P	D	S	F	F	R	P	L	L	S	C	A	A	I	H	S	Q	T	N	L	A	H	W	C	D	P	K	F	D	S	V	L	R	K	A	L	S	S	Q	Q	L	A	A	R	I
Query Conservation																	.
Alig confidence																	.											.																																																	.	.
Template Conservation																												.																																																	.	.
Template Sequence		D	A	S	V	L	A	L	D	P	V	A	L	Y	G	D	A	L	V	N	N	R	V	D	A	V	V	.	G	W	R	Q	A	G	G	D	L	A	T	V	L	A	S	R	Y	G	C	R	A	L	Q	A	P	S	N	I	T	G	I	C	D	R	S	I	Q	P	R	I	D	A	A	L	D	G	T	D	.	.	D	I	A
Template Known Secondary structure																T	T	T	T	T	T			S				.						S	S												S	T	T					S		T	T	S				G	G	G									T	T	S	S	.	.
Template Predicted Secondary structure																												.																																																	.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.		.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.			.	.	.
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.	.	.	.	.	.	.		.	.	540
Predicted Secondary structure																																										.										.
Query SS confidence																																										.										.
Query Sequence		E	A	Y	D	E	A	Q	S	I	L	A	Q	E	L	P	I	L	P	L	A	S	S	L	R	L	Q	A	Y	R	Y	D	I	K	G	L	V	L	S	P	F	.	G	N	A	S	F	A	G	V	Y	.	R	E	K
Query Conservation																																										.										.
Alig confidence																																										.										.
Template Conservation
Template Sequence		D	V	I	Q	A	V	E	P	R	L	W	N	M	A	T	V	L	P	I	L	Q	D	T	T	I	V	A	A	G	P	S	V	Q	N	V	S	L	T	G	A	V	P	V	G	I	V	G	D	A	G	D	W	T	K
Template Known Secondary structure														T																	T	T			S			S				T	T	T		S		T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.