Job Description P25522 Confidence 99.59% Date Thu Jan 5 11:41:55 GMT 2012 Rank 106 Aligned Residues 220 % Identity 18% Template c3dpuA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rab family protein; PDBTitle: roccor domain tandem of rab family protein (roco) Resolution 2.90 Å

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		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.							.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																						.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.
Query Sequence		I	A	D	L	D	A	V	R	A	E	A	R	Q	G	S	L	L	R	E	G	.	.	.	.	.	.	M	K	V	V	I	A	G	R	P	N	A	G	K	S	S	L	L	N	A	L	A	G	R	E	A	A	I	V	T	D	I	A	G	T	T	R	D	V	L	R	E	H	I	H	I	D	G	M	P	L	H	I	I	D
Query Conservation																						.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.																																									.	.
Template Conservation																																																																				.	.
Template Sequence		K	E	A	V	R	Q	Y	F	Q	S	I	E	E	A	R	S	K	G	E	A	L	V	H	L	Q	E	I	K	V	H	L	I	G	D	G	M	A	G	K	T	S	L	L	K	Q	L	I	G	G	L	N	V	V	T	K	Q	A	P	N	I	K	G	L	E	N	D	.	.	D	E	L	K	E	C	L	F	H	F	W	D
Template Known Secondary structure																		T	T				B											S	S	S		S	S																			G	G	G	S	G	G	G	T	T		.	.	S	T	T	T	T
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.			.	.	.	.	.	.	.	500	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.								.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.
Query Sequence		T	A	G	L	R	E	A	S	D	E	V	E	R	I	G	I	E	R	A	W	Q	E	I	E	Q	A	D	R	V	L	F	M	V	D	G	T	T	T	D	A	V	D	P	A	E	I	W	P	E	F	I	A	R	L	P	A	K	L	P	I	T	V	V	R	N	K	A	D	I	T	G	.	.	.	.	.	.	.	E	T
Query Conservation																																																																									.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.																				.	.	.																																.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.																				.	.	.
Template Sequence		F	G	G	Q	E	I	M	H	A	S	.	.	.	.	.	.	.	.	H	Q	F	F	M	T	R	S	S	V	Y	M	L	L	L	D	S	R	T	.	.	.	D	S	N	K	H	Y	W	L	R	H	I	E	K	Y	G	G	K	S	P	V	I	V	V	M	N	K	I	D	E	N	P	S	Y	N	I	E	Q	K	K	I
Template Known Secondary structure				S			T	T	T	T	T	.	.	.	.	.	.	.	.							S	S									G	G	G	.	.	.	G	G	G												S	S	S										T	T	T		T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
		516	.	.	.	520	.	.	.	.	.									.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.				.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.			390	.	.	.	.	.	.	.	.	.	400	.	.						.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																																																.	.														.	.	.	.	.
Query SS confidence																																																.	.														.	.	.	.	.
Query Sequence		L	G	M	S	E	V	N	G	H	A	L	I	R	L	S	A	R	T	G	E	G	V	D	V	L	R	N	H	L	K	Q	S	M	G	F	D	T	N	M	E	G	G	F	L	A	R	.	.	R	R	H	L	Q	A	L	E	Q	A	A	E	H	.	.	.	.	.	L	Q	Q	G	K	A	Q	L	L	G	A	W	A	G
Query Conservation																																																.	.														.	.	.	.	.
Alig confidence																					.	.	.	.	.																							.	.														.	.	.	.	.
Template Conservation																					.	.	.	.	.
Template Sequence		N	E	R	F	P	A	I	E	N	R	F	H	R	I	S	C	V	E	S	.	.	.	.	.	I	A	K	S	L	K	S	A	V	L	H	P	D	S	I	Y	G	T	P	L	A	P	S	W	I	K	V	K	E	K	L	V	E	A	T	T	A	Q	R	Y	L	N	R	T	E	V	E	K	I	C	N	D	S	G	I	T
Template Known Secondary structure						G	G	G	T	T									T	T	.	.	.	.	.										T		T	T	S	G	G	G			B																		S	S														T	T
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
		585	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.						.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	L	A	E	E	L	R	L	A	Q	Q	N	L	S	E	I	T	G	E	F
Query Conservation
Alig confidence			.	.														.
Template Conservation			.	.														.
Template Sequence		D	.	.	P	G	E	R	K	T	L	L	G	Y	L	N	N	.	L	G	I	V
Template Known Secondary structure			.	.														.	T	T	S	S
Template Predicted Secondary structure			.	.														.
Template SS confidence
		665			.	.	.	.	670	.	.	.	.	.	.	.	.		.	680	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions