Job Description P25522 Confidence 99.25% Date Thu Jan 5 11:41:55 GMT 2012 Rank 243 Aligned Residues 150 % Identity 23% Template c3cpjB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:gtp-binding protein ypt31/ypt8; PDBTitle: crystal structure of ypt31 in complex with yeast rab-gdi Resolution 2.35 Å

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		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	V	V	I	A	G	R	P	N	A	G	K	S	S	L	L	N	A	L	A	G	R	E	A	A	I	V	T	D	I	A	G	T	T	R	D	V	L	R	E	H	I	H	I	D	G	M	P	L	H	I	I	D	T	A	G	L	R	E	A	S	D	E	V	E	R	I	G	I	E	R	A	W	Q	E	I	E	Q	A
Query Conservation
Alig confidence																											.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template Sequence		F	K	I	V	L	I	G	D	S	G	V	G	K	S	N	L	L	S	R	F	T	K	N	E	F	.	.	.	.	.	N	M	G	V	E	F	A	T	R	T	L	E	I	E	G	K	R	I	K	A	Q	I	W	D	T	A	G	Q	E	R	Y	R	A	I	.	.	.	.	.	.	.	.	T	S	A	Y	Y	R	G	A
Template Known Secondary structure								S		T	T	S	S														.	.	.	.	.					S									T	T											T	T	T	T	T	T	T			.	.	.	.	.	.	.	.		G	G	G	T	T	T
Template Predicted Secondary structure																											.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.									.	.	.	.	.	.	.	80
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.								.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.
Query Sequence		D	R	V	L	F	M	V	D	G	T	T	T	D	A	V	D	P	A	E	I	W	P	E	F	I	A	R	L	P	A	K	L	P	I	T	V	V	R	N	K	A	D	I	T	G	.	.	.	.	.	.	.	E	T	L	G	M	S	E	V	N	G	H	A	L	I	R	L	S	A	R	T	G	E	G	V	D	V	L	R
Query Conservation																																															.	.	.	.	.	.	.
Alig confidence																									.	.																					.	.	.	.	.	.	.																				.
Template Conservation																									.	.																																															.
Template Sequence		V	G	A	L	I	V	Y	D	S	K	S	S	S	Y	E	N	C	N	H	W	L	S	E	.	.	L	R	E	N	A	D	V	A	V	G	L	I	G	N	K	S	D	L	A	H	L	R	A	V	P	T	E	E	S	K	T	F	A	Q	E	N	Q	L	L	F	T	E	T	S	A	L	.	S	E	N	V	D	K	A	F
Template Known Secondary structure																									.	.																G	G	G	G	G	G			S												T	T										.
Template Predicted Secondary structure																									.	.																																															.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	L	K	Q	S	M	G	F	D	T	N	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	L	I	N	T	I	Y	Q	K	V	P	T
Template Known Secondary structure									T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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