Job Description P25522 Confidence 99.37% Date Thu Jan 5 11:41:55 GMT 2012 Rank 209 Aligned Residues 163 % Identity 13% Template c3cphA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:ras-related protein sec4; PDBTitle: crystal structure of sec4 in complex with rab-gdi Resolution 2.90 Å

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		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	V	V	I	A	G	R	P	N	A	G	K	S	S	L	L	N	A	L	A	G	R	E	A	A	I	V	T	D	I	A	G	T	T	R	D	V	L	R	E	H	I	H	I	D	G	M	P	L	H	I	I	D	T	A	G	L	R	E	A	S	D	E	V	E	R	I	G	I	E	R	A	W	Q	E	I	E	Q	A
Query Conservation
Alig confidence																																																																			.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.
Template Sequence		M	K	I	L	L	I	G	D	S	G	V	G	K	S	C	L	L	V	R	F	V	E	D	K	F	N	P	S	F	I	T	T	I	G	I	D	F	K	I	K	T	V	D	I	N	G	K	K	V	K	L	Q	L	W	D	T	A	G	Q	E	R	F	R	T	I	.	.	.	.	.	.	.	T	T	A	Y	Y	R	G	A
Template Known Secondary structure									S	T	T	S	S																S	S	S				S											T	T											T	T	G	G	G	G	T			.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.								.	.	.	.	90	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.								.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.
Query Sequence		D	R	V	L	F	M	V	D	G	T	T	T	D	A	V	D	P	A	E	I	W	P	E	F	I	A	R	L	P	A	K	L	P	I	T	V	V	R	N	K	A	D	I	T	G	.	.	.	.	.	.	.	E	T	L	G	M	S	E	V	N	G	H	A	L	I	R	L	S	A	R	T	G	E	G	V	D	V	L	R
Query Conservation																																															.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	G	I	I	L	V	Y	D	V	T	D	E	R	T	F	T	N	I	K	Q	W	F	K	T	V	N	E	H	A	N	D	E	A	Q	L	L	L	V	G	N	K	S	D	M	E	T	R	V	V	T	A	D	Q	G	E	A	L	A	K	E	L	G	I	P	F	I	E	S	S	A	K	N	D	D	N	V	N	E	I	F
Template Known Secondary structure		S								T	T							T												T	T	T		S									T	T		S	S			S													T							B	T	T	T	T	B	S	S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	L	K	Q	S	M	G	F	D	T	N	M	E	G	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T	L	A	K	L	I	Q	E	K	I	D	S	N	K	L	V
Template Known Secondary structure														T	T	S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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