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Job DescriptionP25522
Confidence99.96%DateThu Jan 5 11:41:55 GMT 2012
Rank9Aligned Residues269
% Identity18%Templatec2wwwB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:methylmalonic aciduria type a protein, PDBTitle: crystal structure of methylmalonic acidemia type a protein
Resolution2.64 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   148.150.........160.... .....170.........180.........190.........200.........210.........220.....
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Query Sequence  LQGAFSARVNHLVEALT. . HLRIYVEAAIDFPDEEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRP
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Template Sequence  LSDKEQRFVDKLYTGLIQGQRACLAEA. ITLVESTHS. . RKKELAQVL. . LQKVLLYHREQEQSNKGKPLAFRVGLSGPP
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   78.80.........90.........100.... .....110... ......120.. .......130.........140.........150..
 
   226...230....... ..240.........250... ......260.........270.........280.........290.......
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Query Sequence  NAGKSSLLNALA. . . . . . GREAAIVTDIAGTTRD. . VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD
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Template Sequence  GAGKSTFIEYFGKMLTERGHKLSVLAVDTELSRDMNAYIRPTRTTNEAILLCEGAGYDIILIET. . . VGQSEFAVADMVD
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   153......160.........170.........180.........190.........200.........210...... ...220.........
 
   298.300.........310.........320.........330.........340......... 350.........360.
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Query Sequence  RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEV. . . . . . . . . . . . . . . . NGHALIRLSART
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Template Sequence  MFVLLLPPI. . . . . . . . . . . . . . . . . . . IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARS
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   259260....... ..270.........280.........290.........300.........310.........
 
   362.......370.........380.........390.........400... ......410.........420.........430.........440
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Query Sequence  GEGVDVLRNHLKQSMGFDTNMEGGFLARRRHLQALEQAAEHL. QQGKAQLLGAWAGELLAEELRLAQQNLSEITGEFTSD
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Template Sequence  GEGISEMWDKMKDFQDLM. . LASGELTAKRRKQQKVWMWNLIQESVLEHFRTHPTVREQIPLLEQKV. . . . . LIGALSPG
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   332.......340......... 350.........360.........370.........380.........390...... ...400....
 
   441........450
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Query Sequence  DLLGRIFSSF
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Template Sequence  LAADFLLKAF
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   405....410....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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