Job Description P25522 Confidence 98.12% Date Thu Jan 5 11:41:55 GMT 2012 Rank 294 Aligned Residues 210 % Identity 23% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.								.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	A	A	R	S	A	L	N	S	L	Q	G	A	F	.	.	.	.	.	.	.	S	A	R	V	N	H	L	V	E	A	L	T	H	L	R	I	Y	V	E	A	A	I	D	F	P	D	E	E	I	D	F	L	S	D	G	K	I	E	A	Q	L	N	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	N	L	N	K	A	L	N	K	L	K	A	A	A	F	V	D	K	K	L	I	K	E	V	I	K	D	I	Q	R	A	L	I	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	N	V	K	L	V	L	K	M	S	K	E	I	E	R	R	A	L	E	E	K	T	P	K	G	L	S	K	K	E
Template Known Secondary structure														S	S	S				S	S	T	T														T	.	.	.	.	.	.	.	.	.	.	.	.	.											T								S	S	S		S	S		S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.														.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
			196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.							.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.							.	.	240	.	.	.	.	.
Predicted Secondary structure		.																			.	.	.	.	.	.																									.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																			.	.	.	.	.	.																									.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	V	I	A	D	L	D	A	V	R	A	E	A	R	Q	G	S	L	L	.	.	.	.	.	.	R	E	G	M	K	V	V	I	A	G	R	P	N	A	G	K	S	S	L	L	N	A	L	A	.	.	.	.	.	.	G	R	E	A	A	I	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.																			.	.	.	.	.	.																									.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																			.	.	.	.	.	.																									.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	I	I	K	I	V	Y	E	E	L	V	K	L	L	G	E	E	A	K	K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E
Template Known Secondary structure																		S								S	S	S										S	S	S	S	T	T																							S				T	T	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
									246	.	.	.	250	.	.	.					.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.									.	.	.	.
Query SS confidence		.	.	.	.	.	.	.									.	.	.	.
Query Sequence		.	.	.	.	.	.	.	D	I	A	G	T	T	R	D	.	.	.	.	V	L	R	E	H	I	H	I	D	G	M	P	L	H	I	I	D	T	A	G	L	R	E	A	S	D	E	V	E	R	I	G	I	E	R	A	W	Q	E	I	E	Q	A	D	R	V	L	F	M	V	D	G	T	T	T	D	A	V	D	P	A
Query Conservation		.	.	.	.	.	.	.									.	.	.	.
Alig confidence		.	.	.	.	.	.	.									.	.	.	.																																.	.
Template Conservation																																																				.	.
Template Sequence		K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	.	.	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	Q	Q	A	G	I	Q
Template Known Secondary structure			S	S							S	S	S			S	S	S	T	T							T	T	S	S		S									S		S	S								.	.				T	T	S	S	S			S								G	G	G	G	G	G
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.				.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		E	I	W	P	E	F	I	A	R	L	P	A	K	L	P	I	T	V	V	R	N	K	A	D	I	T	G	.	.	.	E	T	L	G	M	S	E	V	N	G	H	A	L	I	R	L	S	A	R	T	G	E	G	V	D	V	L
Query Conservation																													.	.	.
Alig confidence						.	.	.	.																				.	.	.																		.	.
Template Conservation						.	.	.	.																																								.	.
Template Sequence		A	K	A	F	.	.	.	.	K	E	A	V	G	E	I	G	S	I	I	V	T	K	L	D	G	S	A	K	G	G	G	A	L	S	A	V	A	E	T	K	A	P	I	K	F	I	G	.	.	I	G	E	G	I	D	D	L
Template Known Secondary structure						.	.	.	.		T	T	S		S									S	S	S		S	T	T										S	S								.	.		S	S	S	S	S	S
Template Predicted Secondary structure						.	.	.	.																																								.	.
Template SS confidence
		231	.	.	.					.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions