Job Description P25522 Confidence 99.97% Date Thu Jan 5 11:41:55 GMT 2012 Rank 8 Aligned Residues 246 % Identity 19% Template c2qthA_ PDB info PDB header:nucleotide binding protein Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150													.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	A	R	P	G	E	F	S	E	R	A	F	L	N	D	K	L	D	L	A	Q	A	E	A	I	A	D	L	I	.	.	.	D	A	S	S	E	Q	A	A	R	S	A	L	N	S	L	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	A	F	S	A	R	V	N	H	L	V	E	A	L	T	H	L	R	I
Query Conservation																																.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.																			.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.
Template Sequence		K	S	P	N	V	K	F	Y	.	.	.	.	I	Q	Y	D	K	L	Q	Q	I	K	N	D	E	E	I	S	T	L	I	I	F	E	Q	L	K	P	R	H	F	I	N	I	R	R	E	L	K	G	K	E	V	L	D	K	I	L	L	L	L	E	I	F	A	L	H	A	G	S	K	E	A	K	M	Q	I	E	L	A
Template Known Secondary structure		S	S		B	T	T	T	B	.	.	.	.	S										T		T	T							S	S															T	T																				S
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	E	A	A	I	D	F	P	D	E	E	I	D	F	L	S	D	G	K	I	E	A	Q	L	N	D	V	I	A	D	L	D	A	V	R	A	E	A	R	Q	G	S	L	L	R	E	G	M	K	V	V	I	A	G	R	P	N	A	G	K	S	S	L	L	N	A	L	A	G	R	E	A	A	I	V	T	D	I	A
Query Conservation
Alig confidence										.	.	.																									.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.																									.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	K	Y	E	L	P	I	.	.	.	I	K	E	T	S	T	I	K	F	Y	K	R	R	I	N	K	L	M	K	E	L	E	S	I	.	.	.	.	.	.	.	.	.	.	K	I	I	P	S	I	G	I	V	G	Y	T	N	S	G	K	T	S	L	F	N	S	L	T	G	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										.	.	.																									.	.	.	.	.	.	.	.	.	.											B	T	T	S	S										T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.																									.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.											.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.				.	.	320	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.
Query SS confidence																																																																							.	.	.
Query Sequence		G	T	T	R	D	V	L	R	E	H	I	H	I	D	G	M	P	L	H	I	I	D	T	A	G	L	R	E	A	S	D	E	V	E	R	I	G	I	E	R	A	W	Q	E	I	E	Q	A	D	R	V	L	F	M	V	D	G	T	T	T	D	A	V	D	P	A	E	I	W	.	.	.	P	E	F	I	A	R	L	P
Query Conservation																																																																							.	.	.
Alig confidence		.	.																																																																				.	.	.
Template Conservation		.	.
Template Sequence		.	.	L	M	S	P	K	R	Y	A	I	P	I	N	N	R	K	I	M	L	V	D	T	V	G	F	I	R	G	I	P	P	Q	I	V	D	A	F	F	V	T	L	S	E	A	K	Y	S	D	A	L	I	L	V	I	D	S	T	F	S	E	N	L	L	I	E	T	L	Q	S	S	F	E	I	L	R	E	I	G	V
Template Known Secondary structure		.	.				S								T	T											B		S	S			G	G	G										G	G	G	G	S	S								T	T	S																				T
Template Predicted Secondary structure		.	.
Template SS confidence
				202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.												.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	L	P	I	T	V	V	R	N	K	A	D	I	T	G	E	T	L	G	M	S	E	.	.	.	.	.	.	.	.	.	.	.	V	N	G	H	A	L	I	R	L	S	A	R	T	G	E	G	V	D	V	L	R	N	H	L	K	Q	S	M	G	F
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	K	P	I	L	V	T	L	N	K	I	D	K	I	N	G	D	L	Y	K	K	L	D	L	V	E	K	L	S	K	E	L	Y	S	P	I	F	D	V	I	P	I	S	A	L	K	R	T	N	L	E	L	L	R	D	K	I	Y	Q	L	A	T	Q
Template Known Secondary structure			S										G	G	G			S																		S									B	T	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions