Job Description P25522 Confidence 99.80% Date Thu Jan 5 11:41:55 GMT 2012 Rank 42 Aligned Residues 163 % Identity 15% Template c2plfA_ PDB info PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form. Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.																													.
Predicted Secondary structure																																						.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	E	G	M	K	V	V	I	A	G	R	P	N	A	G	K	S	S	L	L	N	A	L	A	G	R	E	A	A	I	V	T	D	I	A	.	.	G	T	T	R	D	V	L	R	E	H	I	H	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D
Query Conservation																																						.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Q	P	E	V	N	I	G	V	V	G	H	V	D	H	G	K	T	T	L	V	Q	A	I	T	G	I	W	T	S	K	H	S	E	E	L	K	R	G	M	T	I	K	L	G	Y	A	E	T	N	I	G	V	C	E	S	C	K	K	P	E	A	Y	V	T	E	P	S	C	K	S	C	G	S	D	D	E	P	K	F
Template Known Secondary structure													S	S	T	T	S	S	S	T	T						S	S		S	T	T		T	T	T	T	T	T				S	S												T	T	S		T	T	T	T			S	S	S			G	G	G	T			S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	P	L	H	I	I	D	T	A	G	L	R	E	A	S	D	E	V	E	R	I	G	I	E	R	A	W	Q	E	I	E	Q	A	D	R	V	L	F	M	V	D	G	T	T	T	D	A	V	D	P	A	E	I	W	P	E	F	I	A	R	L	P	A	K	L	P	I	T	V	V	R	N	K	A	D	I	T	G	E
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.																																					.
Template Conservation																				.	.	.	.	.	.	.	.																																					.
Template Sequence		L	R	R	I	S	F	I	D	A	P	G	H	E	V	L	M	A	T	.	.	.	.	.	.	.	.	M	L	S	G	A	A	L	M	D	G	A	I	L	V	V	A	A	N	E	P	F	P	Q	P	Q	T	R	E	H	F	V	A	L	G	I	I	.	G	V	K	N	L	I	I	V	Q	N	K	V	D	V	V	S	K
Template Known Secondary structure												S	S				S	S	S	.	.	.	.	.	.	.	.					T	T	S		S								T	T	S		S	S														T	.	T			S								G	G	G	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.																																					.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.									.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		343	.	.	.	.	.	.													350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	G	M	S	E	V	.	.	.	.	.	.	.	.	.	.	.	.	N	G	H	A	L	I	R	L	S	A	R	T	G	E	G	V	D	V	L	R	N	H	L	K	Q	S	M	G	F	D	T	N	M	E	G
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	A	L	S	Q	Y	R	Q	I	K	Q	F	T	K	G	T	W	A	E	N	V	P	I	I	P	V	S	A	L	H	K	I	N	I	D	S	L	I	E	G	I	E	E	Y	I	K	T	P	Y	R	D	L	S
Template Known Secondary structure													T	T	S	T	T	S	G	G	G	G							B	T	T	T	T	B	S												S							T	T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions