Job Description P25522 Confidence 98.14% Date Thu Jan 5 11:41:55 GMT 2012 Rank 293 Aligned Residues 193 % Identity 18% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		139	140	.	.	.	.	.	.	.	.	.	150	.				.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.												190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure															.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	A	R	S	A	L	N	S	L	Q	G	A	.	.	.	F	S	A	R	V	N	H	L	V	E	A	L	T	H	L	R	I	Y	V	E	A	A	I	D	F	P	D	E	E	I	D	F	L	S	D	G	K	I	.	.	.	.	.	.	.	.	.	.	.	E	A	Q	L	N	D	V	I	A	D	L	D	A	V	R
Query Conservation															.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	L	Q	E	A	I	G	R	L	R	G	R	G	R	I	T	E	E	D	L	K	A	T	L	R	E	I	R	R	A	L	M	D	A	D	V	N	L	E	V	A	R	D	F	V	E	R	V	R	E	E	A	L	G	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T	V	Y	E	A	L	K	E	A	L
Template Known Secondary structure											T	T	T	S		S																			T	T	T																				T	T	T	T	T		S																		T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.							.	.	240	.	.	.	.	.	.	.	.																								.	250	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	A	R	Q	G	S	L	L	R	E	G	M	K	V	V	I	A	G	R	P	N	A	G	K	S	S	L	L	N	A	L	A	.	.	.	.	.	.	G	R	E	A	A	I	V	T	D	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T	R	D	V	L
Query Conservation																																			.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E
Template Known Secondary structure		T	S	S								S	S									T	T	S	S															T	T										S	S																T								T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		256	.	.	.	260							.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.
Query Sequence		R	E	H	I	H	.	.	.	.	.	.	I	D	G	M	P	L	H	I	I	D	T	A	G	L	R	E	A	S	D	E	V	E	R	I	G	I	E	R	A	W	Q	E	I	E	Q	A	D	R	V	L	F	M	V	D	G	T	T	T	D	A	V	D	P	A	E	I	W	P	E	F	I	A	R	L	P	A	K	L	P
Query Conservation							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																									.	.																								.	.	.	.	.
Template Conservation																																					.	.																								.	.	.	.	.
Template Sequence		S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	.	.	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	.	.	.	.	.	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V
Template Known Secondary structure															T		S										S	S									.	.											S								S	S	S		S	.	.	.	.	.													S
Template Predicted Secondary structure																																					.	.																								.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	V	V	R	N	K	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	L	V	L	T	K	L	D
Template Known Secondary structure									S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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