Job Description P25522 Confidence 100.00% Date Thu Jan 5 11:41:55 GMT 2012 Rank 1 Aligned Residues 441 % Identity 38% Template c1xzqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable trna modification gtpase trme; PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf Resolution 2.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		D	T	I	V	A	Q	A	T	P	P	G	R	G	G	V	G	I	L	R	I	S	G	F	K	A	R	E	V	A	E	T	V	L	.	.	G	K	L	P	K	P	R	Y	A	D	Y	L	P	F	K	D	A	D	G	S	V	L	D	Q	G	I	A	L	W	F	P	G	P	N	S	F	T	G	E	D	V	L	E	L	Q
Query Conservation																																			.	.
Alig confidence																																			.	.																		.
Template Conservation																																																						.
Template Sequence		D	T	I	V	A	V	A	T	P	P	G	K	G	A	I	A	I	L	R	L	S	G	P	D	S	W	K	I	V	Q	K	H	L	R	T	R	S	K	I	V	P	R	K	A	I	H	G	W	I	H	E	N	.	G	E	D	V	D	E	V	V	V	V	F	Y	K	S	P	K	S	Y	T	G	E	D	M	V	E	V	M
Template Known Secondary structure									S		S	S			S	B							S	S	T							T	T				S	S				T	T									S	S	.	S	S												S	S	S	S	S	S	S	S
Template Predicted Secondary structure																																																						.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	G	G	P	V	I	L	D	L	L	L	K	R	I	L	T	I	P	G	L	R	I	A	R	P	G	E	F	S	E	R	A	F	L	N	D	K	L	D	L	A	Q	A	E	A	I	A	D	L	I	D	A	S	S	E	Q	A	A	R	S	A	L	N	S	L	Q	G	A	F	S	A	R	V	N	H	L	V	E	A
Query Conservation
Alig confidence																			.
Template Conservation																			.
Template Sequence		C	H	G	G	P	L	V	V	K	K	L	L	D	L	F	L	K	.	S	G	A	R	M	A	E	P	G	E	F	T	K	R	A	F	L	N	G	K	M	D	L	T	S	A	E	A	V	R	D	L	I	E	A	K	S	E	T	S	L	K	L	S	L	R	N	L	K	G	G	L	R	D	F	V	D	S	L	R	R	E
Template Known Secondary structure			B		S													T	.	T	T						B	T									T	T	S	S													T			S											T	T	T
Template Predicted Secondary structure																			.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	H	L	R	I	Y	V	E	A	A	I	D	F	P	D	E	E	I	D	F	L	S	D	G	K	I	E	A	Q	L	N	D	V	I	A	D	L	D	A	V	R	A	E	A	R	Q	G	S	L	L	R	E	G	M	K	V	V	I	A	G	R	P	N	A	G	K	S	S	L	L	N	A	L	A	G	R	E	A	A
Query Conservation
Alig confidence																				.	.
Template Conservation																				.	.
Template Sequence		L	I	E	V	L	A	E	I	R	V	E	L	D	Y	P	D	E	I	.	.	E	T	N	T	G	E	V	V	T	R	L	E	R	I	K	E	K	L	T	E	E	L	K	K	A	D	A	G	I	L	L	N	R	G	L	R	M	V	I	V	G	K	P	N	V	G	K	S	T	L	L	N	R	L	L	N	E	D	R	A
Template Known Secondary structure																S	S	S		.	.																								S																			T	T	G	G	G	S										T	B
Template Predicted Secondary structure																				.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		I	V	T	D	I	A	G	T	T	R	D	V	L	R	E	H	I	H	I	D	G	M	P	L	H	I	I	D	T	A	G	L	.	R	E	A	S	D	E	V	E	R	I	G	I	E	R	A	W	Q	E	I	E	Q	A	D	R	V	L	F	M	V	D	G	T	T	T	D	A	V	D	P	A	E	I	W	P	E	F	I
Query Conservation																																		.
Alig confidence																																		.																																															.
Template Conservation																																																																																	.
Template Sequence		I	V	T	D	I	P	G	T	T	R	D	V	I	S	E	E	I	V	I	R	G	I	L	F	R	I	V	D	T	A	G	V	R	S	E	T	N	D	L	V	E	R	L	G	I	E	R	T	L	Q	E	I	E	K	A	D	I	V	L	F	V	L	D	A	S	S	P	L	D	E	E	D	R	K	I	L	E	R	I	.
Template Known Secondary structure										S			S								T	T								S	S				S	S			S	S																	S								S	S	S													G	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.					.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.																																				.
Query SS confidence																						.	.	.	.																																				.
Query Sequence		A	R	L	P	A	K	L	P	I	T	V	V	R	N	K	A	D	I	T	G	.	.	.	.	E	T	L	G	M	S	E	V	N	G	H	A	L	I	R	L	S	A	R	T	G	E	G	V	D	V	L	R	N	H	L	K	Q	S	M	.	G	F	D	T	N	M	E	G	G	F	L	A	R	R	R	H	L	Q	A	L
Query Conservation																						.	.	.	.																																				.
Alig confidence		.	.	.	.																	.	.	.	.																																				.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	K	N	K	R	Y	L	V	V	I	N	K	V	D	V	V	E	K	I	N	E	E	E	I	K	N	K	L	G	T	D	R	H	M	V	K	I	S	A	L	K	G	E	G	L	E	K	L	E	E	S	I	Y	R	E	T	Q	E	I	F	E	R	G	S	D	S	L	I	T	N	L	R	Q	K	Q	L	L
Template Known Secondary structure		.	.	.	.	G	G	S	S									S	S				S									T	S		S	T	T						T	T	T	T														T								T	T		S			S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	A	A	E	H	L	Q	Q	G	K	A	Q	L	L	G	A	W	A	G	E	L	L	A	E	E	L	R	L	A	Q	Q	N	L	S	E	I	T	G	E	F	T	S	D	D	L	L	G	R	I	F	S	S	F	C	I	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	V	K	G	H	L	E	D	A	I	K	S	L	K	E	G	M	P	V	D	M	A	S	I	D	L	E	R	A	L	N	L	L	D	E	V	T	G	R	S	F	R	E	D	L	L	D	T	I	F	S	N	F	C	V	G	K
Template Known Secondary structure																	T	T																						T	S	S												T	S		B	T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450