Job Description P25522 Confidence 96.76% Date Thu Jan 5 11:41:55 GMT 2012 Rank 336 Aligned Residues 201 % Identity 16% Template c1j8yF_ PDB info PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant Resolution 2.00 Å

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		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.												.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.																										.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.																										.	.
Query Sequence		S	A	R	V	N	H	L	V	E	A	L	T	H	L	R	I	Y	V	E	A	A	I	D	F	P	D	E	E	I	D	F	L	S	D	G	K	I	E	A	Q	.	.	.	.	.	.	.	.	.	.	.	L	N	D	V	I	A	D	L	D	A	V	R	A	E	A	R	Q	G	S	L	L	R	E	G	M	.	.	K	V
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.																										.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence		D	K	A	V	E	D	F	I	K	E	L	Q	K	S	L	I	S	A	D	V	N	V	K	L	V	F	S	L	T	N	K	I	K	E	R	L	K	N	E	K	P	P	T	Y	I	E	R	R	E	W	F	I	K	I	V	Y	D	E	L	S	N	L	F	G	G	D	K	E	P	K	V	I	P	D	K	I	P	Y	V	I
Template Known Secondary structure																			T	T																								T	T																			T	T		S						S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.																	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260														.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	I	A	G	R	P	N	.	.	A	G	K	S	S	L	L	N	A	L	A	G	R	E	A	A	I	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	A	G	T	T	R	D	V	L	R	E	H	I	H	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	G	M	P	L	H	I
Query Conservation									.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	L	V	G	V	Q	G	T	T	A	G	K	L	A	Y	F	Y	K	K	K	G	F	K	V	G	L	V	G	A	D	V	Y	R	P	A	A	L	E	Q	L	Q	Q	L	G	Q	Q	I	G	V	P	V	Y	G	E	P	G	E	K	D	V	V	G	I	A	K	R	G	V	E	K	F	L	S	E	K	M	E	I	I	I
Template Known Secondary structure						S															T	T											S	S															T							T	T																		T	T		S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.				.	.	.	.
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		I	D	T	A	G	L	R	E	A	S	D	E	V	E	R	I	G	I	E	R	A	W	Q	E	I	E	Q	A	D	R	V	L	F	M	V	D	G	T	T	T	D	A	V	D	P	A	E	I	W	P	E	F	I	A	R	L	P	A	K	L	P	I	T	V	V	R	N	K	A	D	I	T	G	.	.	.	E	T	L	G
Query Conservation																																																																											.	.	.
Alig confidence																																											.	.	.	.	.																												.	.	.
Template Conservation																																											.	.	.	.	.
Template Sequence		V	D	T	A	G	R	H	G	Y	G	E	E	A	A	L	L	E	E	M	K	N	I	Y	E	A	I	K	P	D	E	V	T	L	V	I	D	A	S	I	G	Q	.	.	.	.	.	K	A	Y	D	L	A	S	K	F	N	Q	A	S	K	I	G	T	I	I	I	T	K	M	D	G	T	A	K	G	G	G	A	L	S
Template Known Secondary structure							S			T	T																			S								G	G	G	G	G	.	.	.	.	.	G													T	T								T	T	S		S
Template Predicted Secondary structure																																											.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.						.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		346	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	E	V	N	G	H	A	L	I	R	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	A	A	T	G	A	T	I	K	F	I	G
Template Known Secondary structure					T	T	T
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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