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Job DescriptionP04983
Confidence100.00%DateThu Jan 5 10:58:31 GMT 2012
Rank7Aligned Residues454
% Identity21%Templatec3pihA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40....... ..50.........60.
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Query Sequence  LSGAALNVYPGRVMALVGENGAGKSTMM. . . . . . . . . . . . . KVLTGIYTRDAGTL. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LKNITVRIPKNRLVVITGVSGSGKSSLAMDTIYAEGQRRYLESLSTYKKPDVDEIEGLSPAIAIDQKTSHNPRSTVGTVT
Template Known Secondary structure 

SB

TTSSTTSSSTTTTTS





S
ST



S



STT
BT
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   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   62.......70.........
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Query Sequence  . . . . . . . . . . . . . . . . . . LWLGKETTFTGPKSSQEA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation   
   

 
 

 
   

                                  
  
                       
Template Sequence  EIYDYLRVLYARIGKAHCPECGRPLEKKSIDEILQDLFNSFKEGSRIYILAPLVVDRLILETRNEHRILDSLELAMREGK
Template Known Secondary structure  TS
B
TTT

B
B


S
TT







GGGT
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   103......110.........120.........130.........140.........150.........160.........170.........180..
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                      

 
   
 
  
 
 
     
                     
Template Sequence  GFVEIRNVDTGESKIFSENLMCPVCGIGFPEITPKLFSFNSPYGACPNCHGLGFTFEVDPSLVAIIPYRWDRRLSRWVAR
Template Known Secondary structure  STTT

SS
B
TTT






SGGGG
TTSTTTB
TTTTTSS
S




GGGTT
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   231........240.........250.........260.........270.........280.........290.........300.........310
 
   80.........90....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GIGIIHQELNLIPQL
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Template Conservation                         
                           
  
 
 

        
 
  
      
Template Sequence  EIEKRGVSPPEDVKEFILYGDFEGVVPKVQRWHRETEMKEWLEKNFIVQRTCSVCGGRRLNREALSVKINGLNIHEFTEL
Template Known Secondary structure  TTTT




S
T








TT
TTT
S

B
TTGGGTTS
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   321........330.........340.........350.........360.........370.........380.........390.........400
 
   95....100.........110.........120..... ....130.... .....140.........150.........160. ....
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Query Sequence  TIAENIFLGREFVNRFGKIDWKTMYAEADKL. . . . . . LAKLNLRFK. SDKLVGDLSIGDQQMVEIAKVLSFESK. . VIIM
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Template Sequence  SISEELEFLKNL. . NLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVL
Template Known Secondary structure  BS
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TTTTTTTTT
TT
BTTSBGGG

TT

S
Template Predicted Secondary structure 

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   413......420.... .....430.........440.........450.........460.........470.........480.........490
 
   166...170.........180.........190.........200.........210.... .....220.........230.......
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Query Sequence  DEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVF. . . . . . RDGQFIAEREVASLTEDSLIEMM. .
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Template Sequence  DEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVI. RNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGE
Template Known Secondary structure 
TTTT

GGGTTTTT



.T
SSSSGGG
S
S
TT
Template Predicted Secondary structure 








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   491........500.........510.........520......... 530.........540.........550.........560.........
 
   238.240.........250.........260.........270.........280.........290..... ....300.........310......
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Query Sequence  VGRKLEDQYPHLDKAPGDIRLKVDNLCGPGVNDVSFTLRKGEILGVSGLMGAGRTELM. KVLYGALPRTSGYVTLDGHEV
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Template Sequence  YLSGKRKITVNKTRRLPYASLKIKGVRHNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEF
Template Known Secondary structure  SSS




SS



SS
STT

SSSS
STTSST








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   570.........580.........590.........600.........610.........620.........630.........640.........
 
   317..320.........330.........340.
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Query Sequence  VTRSPQDGLANGIVYISEDRKRDGL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation         .    
  
 
 

    

         
 

 

     
          
 
   
      
 
     
Template Sequence  DSIEGHE. NIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIE
Template Known Secondary structure  S
GG.G


S





TT

SSTTSSS

GGGG
TTSTTTB
TTTTTSS
Template Predicted Secondary structure 



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   650...... ...660.........670.........680.........690.........700.........710.........720........
 
   342.......350.........360.........370.........380.........390....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . VLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIG
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Template Conservation     
           
 
     
 
      
   
  
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Template Sequence  MLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMT. . . . VDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPAT
Template Known Secondary structure 
TTS


TTTTTS
B
TTGGG

BTTB
SSB....TTT
TTGGGSBTT

ST
Template Predicted Secondary structure 















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   729730.........740.........750.........760........ .770.........780.........790.........800....
 
   395....400.........410..... ....420.........430.........440.........450.........460........
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Query Sequence  LLSGGNQQKVAIARGLMTRPK. . . VLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVM. . .
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Template Sequence  TLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN. ADHIIDLGPE
Template Known Secondary structure  T

TS


SSSTTTT

TT



TT.
SSS
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   805....810.........820.........830.........840.........850.........860.........870... ......880...
 
   469470.........480..
Predicted Secondary structure  ...


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Query Sequence  . . . HEGHLSGEFTREQA
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Template Conservation   
   
 

  


 

Template Sequence  GGKEGGYIVATGTPEEI
Template Known Secondary structure  SGGG

S
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   884.....890.........900
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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